comparison Galaxy-Workflow-Test_Workflow_20_step_(w__input).ga @ 1:082b292005bb draft default tip

Uploaded 20 step test workflow
author hackdna
date Wed, 27 Mar 2013 10:23:46 -0400
parents
children
comparison
equal deleted inserted replaced
0:2a28ac9bf843 1:082b292005bb
1 {
2 "a_galaxy_workflow": "true",
3 "annotation": "refinery_workflow=True",
4 "format-version": "0.1",
5 "name": "Test Workflow 20 step (w/ input)",
6 "steps": {
7 "0": {
8 "annotation": "",
9 "id": 0,
10 "input_connections": {},
11 "inputs": [
12 {
13 "description": "",
14 "name": "input_file"
15 }
16 ],
17 "name": "Input dataset",
18 "outputs": [],
19 "position": {
20 "left": 255,
21 "top": 119
22 },
23 "tool_errors": null,
24 "tool_id": null,
25 "tool_state": "{\"name\": \"input_file\"}",
26 "tool_version": null,
27 "type": "data_input",
28 "user_outputs": []
29 },
30 "1": {
31 "annotation": "keep=output_file",
32 "id": 1,
33 "input_connections": {
34 "empty_file": {
35 "id": 0,
36 "output_name": "output"
37 }
38 },
39 "inputs": [],
40 "name": "Dummy Tool",
41 "outputs": [
42 {
43 "name": "output_file",
44 "type": "txt"
45 }
46 ],
47 "position": {
48 "left": 220,
49 "top": 231
50 },
51 "post_job_actions": {},
52 "tool_errors": null,
53 "tool_id": "dummy_tool",
54 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
55 "tool_version": "1.0.0",
56 "type": "tool",
57 "user_outputs": []
58 },
59 "2": {
60 "annotation": "keep=output_file",
61 "id": 2,
62 "input_connections": {
63 "empty_file": {
64 "id": 1,
65 "output_name": "output_file"
66 }
67 },
68 "inputs": [],
69 "name": "Dummy Tool",
70 "outputs": [
71 {
72 "name": "output_file",
73 "type": "txt"
74 }
75 ],
76 "position": {
77 "left": 446,
78 "top": 235
79 },
80 "post_job_actions": {},
81 "tool_errors": null,
82 "tool_id": "dummy_tool",
83 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
84 "tool_version": "1.0.0",
85 "type": "tool",
86 "user_outputs": []
87 },
88 "3": {
89 "annotation": "",
90 "id": 3,
91 "input_connections": {
92 "empty_file": {
93 "id": 2,
94 "output_name": "output_file"
95 }
96 },
97 "inputs": [],
98 "name": "Dummy Tool",
99 "outputs": [
100 {
101 "name": "output_file",
102 "type": "txt"
103 }
104 ],
105 "position": {
106 "left": 673,
107 "top": 236
108 },
109 "post_job_actions": {},
110 "tool_errors": null,
111 "tool_id": "dummy_tool",
112 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
113 "tool_version": "1.0.0",
114 "type": "tool",
115 "user_outputs": []
116 },
117 "4": {
118 "annotation": "keep=output_file",
119 "id": 4,
120 "input_connections": {
121 "empty_file": {
122 "id": 3,
123 "output_name": "output_file"
124 }
125 },
126 "inputs": [],
127 "name": "Dummy Tool",
128 "outputs": [
129 {
130 "name": "output_file",
131 "type": "txt"
132 }
133 ],
134 "position": {
135 "left": 901,
136 "top": 235
137 },
138 "post_job_actions": {},
139 "tool_errors": null,
140 "tool_id": "dummy_tool",
141 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
142 "tool_version": "1.0.0",
143 "type": "tool",
144 "user_outputs": []
145 },
146 "5": {
147 "annotation": "",
148 "id": 5,
149 "input_connections": {
150 "empty_file": {
151 "id": 4,
152 "output_name": "output_file"
153 }
154 },
155 "inputs": [],
156 "name": "Dummy Tool",
157 "outputs": [
158 {
159 "name": "output_file",
160 "type": "txt"
161 }
162 ],
163 "position": {
164 "left": 1133,
165 "top": 235
166 },
167 "post_job_actions": {},
168 "tool_errors": null,
169 "tool_id": "dummy_tool",
170 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
171 "tool_version": "1.0.0",
172 "type": "tool",
173 "user_outputs": []
174 },
175 "6": {
176 "annotation": "keep=output_file",
177 "id": 6,
178 "input_connections": {
179 "empty_file": {
180 "id": 5,
181 "output_name": "output_file"
182 }
183 },
184 "inputs": [],
185 "name": "Dummy Tool",
186 "outputs": [
187 {
188 "name": "output_file",
189 "type": "txt"
190 }
191 ],
192 "position": {
193 "left": 222,
194 "top": 358
195 },
196 "post_job_actions": {},
197 "tool_errors": null,
198 "tool_id": "dummy_tool",
199 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
200 "tool_version": "1.0.0",
201 "type": "tool",
202 "user_outputs": []
203 },
204 "7": {
205 "annotation": "",
206 "id": 7,
207 "input_connections": {
208 "empty_file": {
209 "id": 6,
210 "output_name": "output_file"
211 }
212 },
213 "inputs": [],
214 "name": "Dummy Tool",
215 "outputs": [
216 {
217 "name": "output_file",
218 "type": "txt"
219 }
220 ],
221 "position": {
222 "left": 446,
223 "top": 357
224 },
225 "post_job_actions": {},
226 "tool_errors": null,
227 "tool_id": "dummy_tool",
228 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
229 "tool_version": "1.0.0",
230 "type": "tool",
231 "user_outputs": []
232 },
233 "8": {
234 "annotation": "",
235 "id": 8,
236 "input_connections": {
237 "empty_file": {
238 "id": 7,
239 "output_name": "output_file"
240 }
241 },
242 "inputs": [],
243 "name": "Dummy Tool",
244 "outputs": [
245 {
246 "name": "output_file",
247 "type": "txt"
248 }
249 ],
250 "position": {
251 "left": 675,
252 "top": 356
253 },
254 "post_job_actions": {},
255 "tool_errors": null,
256 "tool_id": "dummy_tool",
257 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
258 "tool_version": "1.0.0",
259 "type": "tool",
260 "user_outputs": []
261 },
262 "9": {
263 "annotation": "",
264 "id": 9,
265 "input_connections": {
266 "empty_file": {
267 "id": 8,
268 "output_name": "output_file"
269 }
270 },
271 "inputs": [],
272 "name": "Dummy Tool",
273 "outputs": [
274 {
275 "name": "output_file",
276 "type": "txt"
277 }
278 ],
279 "position": {
280 "left": 906,
281 "top": 357
282 },
283 "post_job_actions": {},
284 "tool_errors": null,
285 "tool_id": "dummy_tool",
286 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
287 "tool_version": "1.0.0",
288 "type": "tool",
289 "user_outputs": []
290 },
291 "10": {
292 "annotation": "",
293 "id": 10,
294 "input_connections": {
295 "empty_file": {
296 "id": 9,
297 "output_name": "output_file"
298 }
299 },
300 "inputs": [],
301 "name": "Dummy Tool",
302 "outputs": [
303 {
304 "name": "output_file",
305 "type": "txt"
306 }
307 ],
308 "position": {
309 "left": 1138,
310 "top": 355
311 },
312 "post_job_actions": {},
313 "tool_errors": null,
314 "tool_id": "dummy_tool",
315 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
316 "tool_version": "1.0.0",
317 "type": "tool",
318 "user_outputs": []
319 },
320 "11": {
321 "annotation": "",
322 "id": 11,
323 "input_connections": {
324 "empty_file": {
325 "id": 10,
326 "output_name": "output_file"
327 }
328 },
329 "inputs": [],
330 "name": "Dummy Tool",
331 "outputs": [
332 {
333 "name": "output_file",
334 "type": "txt"
335 }
336 ],
337 "position": {
338 "left": 219,
339 "top": 488
340 },
341 "post_job_actions": {},
342 "tool_errors": null,
343 "tool_id": "dummy_tool",
344 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
345 "tool_version": "1.0.0",
346 "type": "tool",
347 "user_outputs": []
348 },
349 "12": {
350 "annotation": "keep=output_file",
351 "id": 12,
352 "input_connections": {
353 "empty_file": {
354 "id": 11,
355 "output_name": "output_file"
356 }
357 },
358 "inputs": [],
359 "name": "Dummy Tool",
360 "outputs": [
361 {
362 "name": "output_file",
363 "type": "txt"
364 }
365 ],
366 "position": {
367 "left": 446,
368 "top": 488
369 },
370 "post_job_actions": {},
371 "tool_errors": null,
372 "tool_id": "dummy_tool",
373 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
374 "tool_version": "1.0.0",
375 "type": "tool",
376 "user_outputs": []
377 },
378 "13": {
379 "annotation": "",
380 "id": 13,
381 "input_connections": {
382 "empty_file": {
383 "id": 12,
384 "output_name": "output_file"
385 }
386 },
387 "inputs": [],
388 "name": "Dummy Tool",
389 "outputs": [
390 {
391 "name": "output_file",
392 "type": "txt"
393 }
394 ],
395 "position": {
396 "left": 677,
397 "top": 488
398 },
399 "post_job_actions": {},
400 "tool_errors": null,
401 "tool_id": "dummy_tool",
402 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
403 "tool_version": "1.0.0",
404 "type": "tool",
405 "user_outputs": []
406 },
407 "14": {
408 "annotation": "",
409 "id": 14,
410 "input_connections": {
411 "empty_file": {
412 "id": 13,
413 "output_name": "output_file"
414 }
415 },
416 "inputs": [],
417 "name": "Dummy Tool",
418 "outputs": [
419 {
420 "name": "output_file",
421 "type": "txt"
422 }
423 ],
424 "position": {
425 "left": 909,
426 "top": 484
427 },
428 "post_job_actions": {},
429 "tool_errors": null,
430 "tool_id": "dummy_tool",
431 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
432 "tool_version": "1.0.0",
433 "type": "tool",
434 "user_outputs": []
435 },
436 "15": {
437 "annotation": "",
438 "id": 15,
439 "input_connections": {
440 "empty_file": {
441 "id": 14,
442 "output_name": "output_file"
443 }
444 },
445 "inputs": [],
446 "name": "Dummy Tool",
447 "outputs": [
448 {
449 "name": "output_file",
450 "type": "txt"
451 }
452 ],
453 "position": {
454 "left": 1143,
455 "top": 485
456 },
457 "post_job_actions": {},
458 "tool_errors": null,
459 "tool_id": "dummy_tool",
460 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
461 "tool_version": "1.0.0",
462 "type": "tool",
463 "user_outputs": []
464 },
465 "16": {
466 "annotation": "",
467 "id": 16,
468 "input_connections": {
469 "empty_file": {
470 "id": 15,
471 "output_name": "output_file"
472 }
473 },
474 "inputs": [],
475 "name": "Dummy Tool",
476 "outputs": [
477 {
478 "name": "output_file",
479 "type": "txt"
480 }
481 ],
482 "position": {
483 "left": 212,
484 "top": 607
485 },
486 "post_job_actions": {},
487 "tool_errors": null,
488 "tool_id": "dummy_tool",
489 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
490 "tool_version": "1.0.0",
491 "type": "tool",
492 "user_outputs": []
493 },
494 "17": {
495 "annotation": "",
496 "id": 17,
497 "input_connections": {
498 "empty_file": {
499 "id": 16,
500 "output_name": "output_file"
501 }
502 },
503 "inputs": [],
504 "name": "Dummy Tool",
505 "outputs": [
506 {
507 "name": "output_file",
508 "type": "txt"
509 }
510 ],
511 "position": {
512 "left": 453,
513 "top": 603
514 },
515 "post_job_actions": {},
516 "tool_errors": null,
517 "tool_id": "dummy_tool",
518 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
519 "tool_version": "1.0.0",
520 "type": "tool",
521 "user_outputs": []
522 },
523 "18": {
524 "annotation": "",
525 "id": 18,
526 "input_connections": {
527 "empty_file": {
528 "id": 17,
529 "output_name": "output_file"
530 }
531 },
532 "inputs": [],
533 "name": "Dummy Tool",
534 "outputs": [
535 {
536 "name": "output_file",
537 "type": "txt"
538 }
539 ],
540 "position": {
541 "left": 678,
542 "top": 605
543 },
544 "post_job_actions": {},
545 "tool_errors": null,
546 "tool_id": "dummy_tool",
547 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
548 "tool_version": "1.0.0",
549 "type": "tool",
550 "user_outputs": []
551 },
552 "19": {
553 "annotation": "keep=output_file",
554 "id": 19,
555 "input_connections": {
556 "empty_file": {
557 "id": 18,
558 "output_name": "output_file"
559 }
560 },
561 "inputs": [],
562 "name": "Dummy Tool",
563 "outputs": [
564 {
565 "name": "output_file",
566 "type": "txt"
567 }
568 ],
569 "position": {
570 "left": 913,
571 "top": 602
572 },
573 "post_job_actions": {},
574 "tool_errors": null,
575 "tool_id": "dummy_tool",
576 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
577 "tool_version": "1.0.0",
578 "type": "tool",
579 "user_outputs": []
580 },
581 "20": {
582 "annotation": "",
583 "id": 20,
584 "input_connections": {
585 "empty_file": {
586 "id": 19,
587 "output_name": "output_file"
588 }
589 },
590 "inputs": [],
591 "name": "Dummy Tool",
592 "outputs": [
593 {
594 "name": "output_file",
595 "type": "txt"
596 }
597 ],
598 "position": {
599 "left": 1148,
600 "top": 601
601 },
602 "post_job_actions": {},
603 "tool_errors": null,
604 "tool_id": "dummy_tool",
605 "tool_state": "{\"__page__\": 0, \"num_seconds\": \"\\\"2\\\"\", \"empty_file\": \"null\"}",
606 "tool_version": "1.0.0",
607 "type": "tool",
608 "user_outputs": []
609 }
610 }
611 }