comparison validate_affy_metadata.py @ 21:90688364136c draft

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20:2df07ae9af2d

        line = line.rstrip("\r\n")
        if i > 97:
            accumulated_msgs = add_error_msg(accumulated_msgs, "The input file contains more than 97 lines (must be 1 header line and no more than 96 data lines).")
            stop_error(accumulated_msgs)
        items = line.split("\t")
        if len(items) != 28:
            accumulated_msgs = add_error_msg(accumulated_msgs, "Line %d contains %s columns, (must be 28)." % (i, len(items)))
            stop_error(accumulated_msgs)
        # Required and validated.
        # Required.
        user_specimen_id = items[0]
        if len(user_specimen_id) == 0:

        # Optional.
        public = string_as_boolean_string(items[26])
        # Optional.
        public_after_date = items[27]
        accumulated_msga = validate_date_string(i, public_after_date, accumulated_msgs)

if len(accumulated_msgs) > 0:
    stop_error(accumulated_msgs)

shutil.copyfile(args.input, args.output)

21:90688364136c

        line = line.rstrip("\r\n")
        if i > 97:
            accumulated_msgs = add_error_msg(accumulated_msgs, "The input file contains more than 97 lines (must be 1 header line and no more than 96 data lines).")
            stop_error(accumulated_msgs)
        items = line.split("\t")
        if len(items) != 30:
            accumulated_msgs = add_error_msg(accumulated_msgs, "Line %d contains %s columns, (must be 30)." % (i, len(items)))
            stop_error(accumulated_msgs)
        # Required and validated.
        # Required.
        user_specimen_id = items[0]
        if len(user_specimen_id) == 0:

        # Optional.
        public = string_as_boolean_string(items[26])
        # Optional.
        public_after_date = items[27]
        accumulated_msga = validate_date_string(i, public_after_date, accumulated_msgs)
        # Required and validated.
        sperm_motility = items[28]
        accumulated_msgs = validate_decimal(i, sperm_motility, accumulated_msgs)
        # Required and validated.
        healing_time = items[29]
        accumulated_msgs = validate_decimal(i, healing_time, accumulated_msgs)

if len(accumulated_msgs) > 0:
    stop_error(accumulated_msgs)

shutil.copyfile(args.input, args.output)