Mercurial > repos > greg > snpeff_v2_from_pablo

diff snpEff_2_1a/scripts/snpEffXL.sh @ 0:f8eaa3f8194b default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
author greg
date Fri, 20 Apr 2012 14:47:09 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/snpEff_2_1a/scripts/snpEffXL.sh	Fri Apr 20 14:47:09 2012 -0400
@@ -0,0 +1,9 @@
+#!/bin/sh
+
+DIR=$HOME/snpEff/
+LIB=$HOME/snpEff/lib
+
+java -Xmx20G \
+	-classpath "$LIB/charts4j-1.2.jar:$LIB/flanagan.jar:$LIB/freemarker.jar:$LIB/junit.jar:$LIB/trove-3.0.2.jar:$LIB/akka-actor-2.0-M4.jar:$LIB/scala-library.jar:$DIR" \
+	ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff \
+	$*