Mercurial > repos > greg > snpeff_v2_from_pablo

diff snpEff_2_1a/scripts/bam2fastq.pl @ 0:f8eaa3f8194b default tip

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Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
author greg
date Fri, 20 Apr 2012 14:47:09 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/snpEff_2_1a/scripts/bam2fastq.pl	Fri Apr 20 14:47:09 2012 -0400
@@ -0,0 +1,8 @@
+#!/usr/bin/perl
+
+while( $l = <STDIN> ) {
+	chomp $l;
+	@t = split /\t/, $l;
+	print "\@$t[0]\n$t[9]\n+\n$t[10]\n";
+}
+