Mercurial > repos > greg > snpeff_v2_from_pablo

diff snpEff_2_1a/scripts/buildTestCases.sh @ 0:f8eaa3f8194b default tip

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Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
author greg
date Fri, 20 Apr 2012 14:47:09 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/snpEff_2_1a/scripts/buildTestCases.sh	Fri Apr 20 14:47:09 2012 -0400
@@ -0,0 +1,16 @@
+#!/bin/sh
+
+# Test cases hg37
+./scripts/snpEffM.sh build -v -txt testCase
+
+# Test cases hg37.61
+./scripts/snpEffM.sh build -v -gtf22 testHg3761Chr15
+./scripts/snpEffM.sh build -v -gtf22 testHg3761Chr16 
+
+# Test cases hg37.63
+./scripts/snpEffM.sh build -v -gtf22 testHg3763Chr1
+./scripts/snpEffM.sh build -v -gtf22 testHg3763Chr20 
+./scripts/snpEffM.sh build -v -gtf22 testHg3763ChrY 
+
+# Test cases hg37.65
+./scripts/snpEffM.sh build -v -gtf22 testHg3765Chr22