Mercurial > repos > greg > snpeff_v2_from_pablo
comparison snpEff_2_1a/scripts/snpEffM.sh @ 0:f8eaa3f8194b default tip
Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
| author | greg |
|---|---|
| date | Fri, 20 Apr 2012 14:47:09 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:f8eaa3f8194b |
|---|---|
| 1 #!/bin/sh | |
| 2 | |
| 3 DIR=$HOME/snpEff | |
| 4 LIB=$HOME/snpEff/lib | |
| 5 | |
| 6 java -Xmx3G \ | |
| 7 -classpath "$LIB/charts4j-1.2.jar:$LIB/flanagan.jar:$LIB/freemarker.jar:$LIB/junit.jar:$LIB/trove-3.0.2.jar:$LIB/akka-actor-2.0-M4.jar:$LIB/scala-library.jar:$DIR" \ | |
| 8 ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff \ | |
| 9 $* |