Mercurial > repos > greg > snpeff_v2_from_pablo
comparison snpEff_2_1a/scripts/buildTestCases.sh @ 0:f8eaa3f8194b default tip
Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
| author | greg |
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| date | Fri, 20 Apr 2012 14:47:09 -0400 |
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| -1:000000000000 | 0:f8eaa3f8194b |
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| 1 #!/bin/sh | |
| 2 | |
| 3 # Test cases hg37 | |
| 4 ./scripts/snpEffM.sh build -v -txt testCase | |
| 5 | |
| 6 # Test cases hg37.61 | |
| 7 ./scripts/snpEffM.sh build -v -gtf22 testHg3761Chr15 | |
| 8 ./scripts/snpEffM.sh build -v -gtf22 testHg3761Chr16 | |
| 9 | |
| 10 # Test cases hg37.63 | |
| 11 ./scripts/snpEffM.sh build -v -gtf22 testHg3763Chr1 | |
| 12 ./scripts/snpEffM.sh build -v -gtf22 testHg3763Chr20 | |
| 13 ./scripts/snpEffM.sh build -v -gtf22 testHg3763ChrY | |
| 14 | |
| 15 # Test cases hg37.65 | |
| 16 ./scripts/snpEffM.sh build -v -gtf22 testHg3765Chr22 |