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1 <tool id="resize_coordinate_window" name="Resize coordinate window" version="1.0.0">
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2 <description>of GFF data</description>
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3 <requirements>
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4 <requirement type="package" version="5.18.1">perl</requirement>
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5 </requirements>
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6 <command>perl $__tool_directory__/resize_coordinate_window.pl "$input" $window "$output"</command>
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7 <inputs>
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8 <param name="input" type="data" format="gff" label="Gff file" />
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9 <param name="window" type="integer" value="0" label="Window size in base pairs" />
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10 </inputs>
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11 <outputs>
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12 <data name="output" format="gff" />
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13 </outputs>
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14 <tests>
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15 <test>
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16 <param name="input" value="input.gff" ftype="gff" />
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17 <param name="window" value="1" />
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18 <output name="output" file="output.gff" ftype="gff" />
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19 </test>
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20 </tests>
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21 <help>
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22
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23 **What it does**
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24
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25 Modifies the start and stop coordinates of GFF data such that the new start and stop position is based on
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26 a specified window size that is centered on the midpoint.
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27
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28 </help>
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29 <citations>
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30 <citation type="bibtex">
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31 @unpublished{None,
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32 author = {Lai, William},
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33 title = {None},
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34 year = {None},
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35 eprint = {None},
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36 url = {http://www.huck.psu.edu/content/research/independent-centers-excellence/center-for-eukaryotic-gene-regulation}
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37 }</citation>
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38 </citations>
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39 </tool>
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