changeset 7:1807688a8a5f draft

Uploaded

--- a/repmatch_gff3.xml	Sat Nov 28 14:54:33 2015 -0500
+++ b/repmatch_gff3.xml	Sat Nov 28 14:54:42 2015 -0500
@@ -22,7 +22,6 @@
             --output_orphan "$output_orphan"
         #end if
         #if str($output_files_cond.output_files) =="all":
-            --plot_format $output_files_cond.plot_format
             --output_detail "$output_detail"
             --output_key "$output_key"
             --output_histogram "$output_histogram"
@@ -48,13 +47,7 @@
             </param>
             <when value="simple" />
             <when value="simple_orphan" />
-            <when value="all">
-                <param name="plot_format" type="select" label="Output format for graph">
-                    <option value="pdf" selected="True">Pdf</option>
-                    <option value="png">Png</option>
-                    <option value="svg">Svg</option>
-                </param>
-            </when>
+            <when value="all" />
         </conditional>
     </inputs>
     <outputs>
@@ -70,11 +63,6 @@
        </data>
         <data name="output_histogram" format="pdf" label="Histogram: ${tool.name} on ${on_string}">
             <filter>output_files_cond["output_files"] == "all"</filter>
-            <actions>
-                <action type="format">
-                    <option type="from_param" name="output_files_cond.plot_format" />
-                 </action>
-           </actions>
        </data>
     </outputs>
     <tests>
@@ -87,7 +75,6 @@
         <param name="low_limit" value="-1000" />
         <param name="up_limit" value="1000" />
         <param name="output_files" value="all" />
-        <param name="plot_format" value="png" />
         <output name="output_summary" file="summary_out1.gff" ftype="gff" />
         <output name="output_orphan" file="orphan_out1.tabular" ftype="tabular" />
         <output name="output_detail" file="orphan_detail1.tabular" ftype="tabular" />