diff repmatch_gff3.py @ 6:6df81aade62c draft

Uploaded

--- a/repmatch_gff3.py	Sat Nov 28 14:54:22 2015 -0500
+++ b/repmatch_gff3.py	Sat Nov 28 14:54:33 2015 -0500
@@ -20,12 +20,11 @@
     parser.add_argument('--low_limit', dest='low_limit', type=int, default=-1000, help='Lower limit for c-w distance filter')
     parser.add_argument('--up_limit', dest='up_limit', type=int, default=1000, help='Upper limit for c-w distance filter')
     parser.add_argument('--output_files', dest='output_files', default='simple', help='Restrict output dataset collections.')
-    parser.add_argument('--plot_format', dest='plot_format', default=None, help='Output format for graph')
     parser.add_argument('--output_summary', dest='output_summary', help='Matched groups in gff format')
     parser.add_argument('--output_orphan', dest='output_orphan', default=None, help='Orphans in tabular format')
     parser.add_argument('--output_detail', dest='output_detail', default=None, help='Details in tabular format')
     parser.add_argument('--output_key', dest='output_key', default=None, help='Keys in tabular format')
-    parser.add_argument('--output_histogram', dest='output_histogram', default=None, help='Histogram in plot_format')
+    parser.add_argument('--output_histogram', dest='output_histogram', default=None, help='Histogram')
 
     args = parser.parse_args()
 
@@ -43,7 +42,6 @@
                                      args.up_limit,
                                      args.low_limit,
                                      args.output_files,
-                                     args.plot_format,
                                      args.output_summary,
                                      args.output_orphan,
                                      args.output_detail,