comparison gene_family_scaffold_loader.py @ 4:3c6514d810ae draft

Uploaded

3:48c13482e6c9

                """
                cur = self.update(sql, tuple(args))
                self.flush()
                gene_id_db = cur.fetchone()[0]
                gi += 1
            # Insert a row into the gene_scaffold_orthogroup_association table.
            # Get the scaffold_rec for the current scaffold_id and clustering_method.
            # The list is [<scaffold_id_db>, <scaffold_id>, <clustering_method>]
            for scaffold_rec in self.scaffold_recs:
                if scaffold_id in scaffold_rec and clustering_method in scaffold_rec:

4:3c6514d810ae

                """
                cur = self.update(sql, tuple(args))
                self.flush()
                gene_id_db = cur.fetchone()[0]
                gi += 1
                if gi % 1000 == 0:
                    self.log("Inserted 1000 more rows into the plant_tribes_gene table.")
            # Insert a row into the gene_scaffold_orthogroup_association table.
            # Get the scaffold_rec for the current scaffold_id and clustering_method.
            # The list is [<scaffold_id_db>, <scaffold_id>, <clustering_method>]
            for scaffold_rec in self.scaffold_recs:
                if scaffold_id in scaffold_rec and clustering_method in scaffold_rec: