# HG changeset patch
# User greg
# Date 1479152553 18000
# Node ID 06c1462f94e6006fac95e573985cc1ec78d2db53
# Parent  2fcd27ee597692728f77435bcf37c3b1f3992919
Uploaded

diff -r 2fcd27ee5976 -r 06c1462f94e6 plant_tribes_assembly_post_processor.xml
--- a/plant_tribes_assembly_post_processor.xml	Mon Nov 14 14:37:05 2016 -0500
+++ b/plant_tribes_assembly_post_processor.xml	Mon Nov 14 14:42:33 2016 -0500
@@ -12,7 +12,6 @@
     </stdio>
     <command>
         <![CDATA[
-            mkdir -p output &&
             AssemblyPostProcesser
             --transcripts "$input1"
             --prediction_method $prediction_method_cond.prediction_method
@@ -89,7 +88,7 @@
     </inputs>
     <outputs>
         <collection name="transcripts" type="list">
-            <discover_datasets pattern="__name__" directory="output" visible="false" />
+            <discover_datasets pattern="__name__" directory="assemblyPostProcessing_dir" visible="false" />
         </collection>
     </outputs>
     <tests>