comparison add_scaffold.py @ 8:9b2ede3e7100 draft

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7:82822d1e5119

            self.process_scaffold_config_files()
            self.process_orthogroup_fasta_files()
            self.fh.flush()
            self.fh.close()
        else:
            self.stop_err("The scaffold %s has already been added to the database." % scaffold_id)

    def process_annot_dir(self):
        """
        First, parse all of the *.min_evalue.summary files in the
        ~/<scaffold_id>/annot directory (e.g., ~/22Gv1.1/annot) to populate

8:9b2ede3e7100

            self.process_scaffold_config_files()
            self.process_orthogroup_fasta_files()
            self.fh.flush()
            self.fh.close()
        else:
            self.stop_err("The scaffold %s has already been added to the database." % os.path.basename(self.args.scaffold_path))

    def process_annot_dir(self):
        """
        First, parse all of the *.min_evalue.summary files in the
        ~/<scaffold_id>/annot directory (e.g., ~/22Gv1.1/annot) to populate