Mercurial > repos > greg > plant_tribes_add_scaffold

comparison add_scaffold.xml @ 2:38b2da3cac1e draft

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author greg
date Tue, 22 May 2018 09:47:13 -0400
parents c6a05684ed31
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1:c6a05684ed31 2:38b2da3cac1e
2 <description>to Galaxy PlantTribes database</description> 2 <description>to Galaxy PlantTribes database</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 python add_scaffold.py 7 python '$__tool_directory__/add_scaffold.py'
8 --database_connection_string '$__app__.config.plant_tribes_database_connection' 8 --database_connection_string '$__app__.config.plant_tribes_database_connection'
9 --output '$output' 9 --output '$output'
10 --scaffold_path '$GALAXY_DATA_INDEX_DIR/plant_tribes/scaffolds/$scaffold' 10 --scaffold_path '$GALAXY_DATA_INDEX_DIR/plant_tribes/scaffolds/$scaffold'
11 --output '$output']]></command> 11 --output '$output']]></command>
12 <inputs> 12 <inputs>