Mercurial > repos > greg > phylogenomics_analysis
changeset 83:bcb75754f5e7 draft
Uploaded
| author | greg |
|---|---|
| date | Thu, 23 Mar 2017 07:57:48 -0400 |
| parents | 7d07e0ebe8c9 |
| children | f0f02b73d5fe |
| files | macros.xml |
| diffstat | 1 files changed, 28 insertions(+), 5 deletions(-) [+] |
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--- a/macros.xml Wed Mar 22 14:47:52 2017 -0400 +++ b/macros.xml Thu Mar 23 07:57:48 2017 -0400 @@ -32,11 +32,34 @@ <option value="advanced">Advanced</option> </param> </xml> - <xml name="param_orthogroup_fna"> - <param name="orthogroup_fna" type="select" label="Process corresponding gene family classification orthogroups CDS fasta files?"> - <option value="yes" selected="true">Yes</option> - <option value="no">No</option> - </param> + <xml name="cond_orthogroup_fna"> + <conditional name="orthogroup_fna_cond"> + <param name="orthogroup_fna" type="select" label="Process corresponding gene family classification orthogroups CDS fasta files?"> + <option value="yes" selected="true">Yes</option> + <option value="no">No</option> + </param> + <when value="yes"> + <conditional name="options_type_cond"> + <when value="basic" /> + <when value="advanced"> + <expand macro="cond_multiple_sequence_alignments" /> + <expand macro="cond_phylogenetic_trees_ptorthocs" /> + <expand macro="cond_remove_gappy_sequences" /> + <expand macro="param_multiple_codon_alignments" /> + </when> + </conditional> + </when> + <when value="no"> + <conditional name="options_type_cond"> + <when value="basic" /> + <when value="advanced"> + <expand macro="cond_multiple_sequence_alignments" /> + <expand macro="cond_phylogenetic_trees_ptorthocs" /> + <expand macro="cond_remove_gappy_sequences" /> + </when> + </conditional> + </when> + </conditional> </xml> <xml name="cond_multiple_sequence_alignments"> <conditional name="multiple_sequence_alignments_cond">