Mercurial > repos > greg > phylogenomics_analysis
changeset 4:37b56c1befaa draft
Uploaded
| author | greg |
|---|---|
| date | Thu, 05 Jan 2017 09:11:57 -0500 |
| parents | fd6773b7bb3f |
| children | 26f5584ab88a |
| files | phylogenomics_analysis.xml |
| diffstat | 1 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/phylogenomics_analysis.xml Wed Jan 04 09:40:42 2017 -0500 +++ b/phylogenomics_analysis.xml Thu Jan 05 09:11:57 2017 -0500 @@ -64,14 +64,14 @@ #end if #end if --scaffold_dir "${GALAXY_DATA_INDEX_DIR}/plant_tribes/scaffolds" - --num_threads \${GALAXY_SLOTS:-4} && - echo "Sequence alignments and corresponding phylogenies: `ls $src_dir | wc -l` files" > $output && - ls $src_dir >> $output && - mv $src_dir/* $dest_dir + --num_threads \${GALAXY_SLOTS:-4} + && echo "Sequence alignments and corresponding phylogenies: `ls $src_dir | wc -l` files" > $output + && ls $src_dir >> $output + && mv $src_dir/* $dest_dir ]]> </command> <inputs> - <param name="orthogroup_fna" format="fasta" type="data" label="Gene family classification coding sequences (CDS) fasta file for which orthogroup fasta files were created"/> + <param name="orthogroup_fna" format="txt" type="data" label="Select sequences classified into gene family clusters"/> <param name="scaffold" type="select" label="Orthogroups or gene families proteins scaffold"> <options from_data_table="plant_tribes_scaffolds" /> <validator type="no_options" message="No PlantTribes scaffolds are available. Use the PlantTribes Scaffolds Download Data Manager tool to install and populate the PlantTribes scaffolds data table."/>