# HG changeset patch
# User greg
# Date 1486151549 18000
# Node ID fa382e4ca9a57b15aab581969358986a683e8e5c
# Parent  4cde2d993ce577cd4dba9c54a34a9568f1e74846
Uploaded

diff -r 4cde2d993ce5 -r fa382e4ca9a5 phylogenomics_analysis.xml
--- a/phylogenomics_analysis.xml	Fri Feb 03 13:57:27 2017 -0500
+++ b/phylogenomics_analysis.xml	Fri Feb 03 14:52:29 2017 -0500
@@ -98,7 +98,7 @@
                         #set rooting_order_file_cond = $tree_inference_cond.rooting_order_file_cond
                         #set rooting_order_file = $rooting_order_file_cond.rooting_order_file
                         #if str($rooting_order_file) == 'yes':
-                            --rooting_order '$rooting_order_file.rooting_order'
+                            --rooting_order '$rooting_order_file_cond.rooting_order'
                         #end if
                         --bootstrap_replicates $tree_inference_cond.bootstrap_replicates
                     #end if