# HG changeset patch
# User greg
# Date 1490270279 14400
# Node ID f0f02b73d5fe3191d7b4c97bac1c381915a17836
# Parent  bcb75754f5e777e667a88cc31bb188e9828873fc
Uploaded

diff -r bcb75754f5e7 -r f0f02b73d5fe phylogenomics_analysis.xml
--- a/phylogenomics_analysis.xml	Thu Mar 23 07:57:48 2017 -0400
+++ b/phylogenomics_analysis.xml	Thu Mar 23 07:57:59 2017 -0400
@@ -134,19 +134,9 @@
             </when>
             <when value="ptorthocs">
                 <param name="input_ptorthocs" format="ptorthocs" type="data" label="Precomputed orthologous gene family clusters with corresponding coding sequences" />
-                <expand macro="param_orthogroup_fna" />
                 <expand macro="param_scaffold" />
                 <expand macro="param_method" />
-                <conditional name="options_type_cond">
-                    <expand macro="param_options_type" />
-                    <when value="basic" />
-                    <when value="advanced">
-                        <expand macro="cond_multiple_sequence_alignments" />
-                        <expand macro="cond_phylogenetic_trees_ptorthocs" />
-                        <expand macro="cond_remove_gappy_sequences" />
-                        <expand macro="param_multiple_codon_alignments" />
-                    </when>
-                </conditional>
+                <expand macro="cond_orthogroup_fna" />
             </when>
         </conditional>
     </inputs>