# HG changeset patch
# User greg
# Date 1484232158 18000
# Node ID d8e7ac110e1b0e78864d43730ee7fbd2b6426b94
# Parent  c2ec4bb1fd5f5e6503158960af9750f7d2d3f98d
Uploaded

diff -r c2ec4bb1fd5f -r d8e7ac110e1b phylogenomics_analysis.xml
--- a/phylogenomics_analysis.xml	Wed Jan 11 13:32:18 2017 -0500
+++ b/phylogenomics_analysis.xml	Thu Jan 12 09:42:38 2017 -0500
@@ -94,6 +94,7 @@
                     #else if str($multiple_sequence_alignments_option) == 'add_alignments':
                         --add_alignments
                     #else if str($multiple_sequence_alignments_option) == 'pasta_alignments':
+                        --pasta_script_path "$__tool_directory__/run_pasta.py"
                         --pasta_alignments
                         --pasta_iter_limit $multiple_sequence_alignments_option_cond.pasta_iter_limit
                     #end if