# HG changeset patch
# User greg
# Date 1484233438 18000
# Node ID c42769258e0d1a62a28575c642aaa29b2a78f89b
# Parent  01c89742cb39b2b1c05b4c919485be6b08191d5c
Uploaded

diff -r 01c89742cb39 -r c42769258e0d phylogenomics_analysis.xml
--- a/phylogenomics_analysis.xml	Thu Jan 12 10:00:28 2017 -0500
+++ b/phylogenomics_analysis.xml	Thu Jan 12 10:03:58 2017 -0500
@@ -149,7 +149,7 @@
             && mv $src_fasta_dir/* $dest_fasta_dir
 
             #if $generate_output_aln:
-                && echo "Multiple sequence alignments using method '$multiple_sequence_alignments_option': `ls $src_aln_dir | grep f | wc -l` files" > $output_aln
+                && echo "Multiple sequence alignments using method '$multiple_sequence_alignments_option' (note that some files may be empty): `ls $src_aln_dir | grep f | wc -l` files" > $output_aln
                 && ls -al $src_aln_dir | grep f >> $output_aln
                 && mv $src_aln_dir/* $dest_aln_dir
             #end if