# HG changeset patch
# User greg
# Date 1484159538 18000
# Node ID c2ec4bb1fd5f5e6503158960af9750f7d2d3f98d
# Parent  40a1cb4c842686120d36d51b27274ed59676cf27
Uploaded

diff -r 40a1cb4c8426 -r c2ec4bb1fd5f phylogenomics_analysis.xml
--- a/phylogenomics_analysis.xml	Wed Jan 11 11:13:42 2017 -0500
+++ b/phylogenomics_analysis.xml	Wed Jan 11 13:32:18 2017 -0500
@@ -54,7 +54,8 @@
             mkdir -p $dest_fasta_dir &&
 
             PhylogenomicsAnalysis
-            --num_threads "\${GALAXY_SLOTS:-4}"
+            --num_threads \${GALAXY_SLOTS:-4}
+            --no_config_override
             --orthogroup_faa "$orthogroup_faa.extra_files_path"
             --scaffold_dir "${GALAXY_DATA_INDEX_DIR}/plant_tribes/scaffolds"
             --scaffold "$scaffold"