# HG changeset patch # User greg # Date 1487258496 18000 # Node ID c2d2ca6cf94b8e9c77fc2f7bcdac519cc48252e1 # Parent 785eef1c4700c58f233ef9f030b0f94a4655ec6d Uploaded diff -r 785eef1c4700 -r c2d2ca6cf94b phylogenomics_analysis.xml --- a/phylogenomics_analysis.xml Thu Feb 16 10:17:48 2017 -0500 +++ b/phylogenomics_analysis.xml Thu Feb 16 10:21:36 2017 -0500 @@ -131,18 +131,18 @@ && echo -e "#Size\tName" > $output_fasta_ptorthocs && ls -l $src_fasta_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_fasta_ptorthocs #end if - && mv $src_fasta_dir/* $dest_fasta_dir + && mv $src_fasta_dir/* $dest_fasta_dir || true #if $generate_output_aln: && echo -e "#Size\tName" > $output_aln && ls -l $src_aln_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_aln - && mv $src_aln_dir/* $dest_aln_dir + && mv $src_aln_dir/* $dest_aln_dir || true #end if #if $generate_output_tree: && echo -e "#Size\tName" > $output_tree && ls -l $src_tree_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_tree - && mv $src_tree_dir/* $dest_tree_dir + && mv $src_tree_dir/* $dest_tree_dir || true #end if ]]>