# HG changeset patch
# User greg
# Date 1483647347 18000
# Node ID b37db5a8ed13fb598ab8fe63088d174d7b043fc5
# Parent  16861f56079fc3f08633539f2f586b0aef0a8f39
Uploaded

diff -r 16861f56079f -r b37db5a8ed13 phylogenomics_analysis.xml
--- a/phylogenomics_analysis.xml	Thu Jan 05 15:13:37 2017 -0500
+++ b/phylogenomics_analysis.xml	Thu Jan 05 15:15:47 2017 -0500
@@ -22,8 +22,8 @@
             #set src_dir = $os.path.join('phylogenomicsAnalysis_dir', 'orthogroups_fasta')
             #set num_orthogroup_faa = 0
             #for f in $os.listdir($src_dir):
-                #if $f.endswith('.faa')])
-                    set num_orthogroup_faa = $num_orthogroup_faa + 1
+                #if $f.endswith('.faa'):
+                    #set num_orthogroup_faa = $num_orthogroup_faa + 1
                 #end if
             #end for
             #if $num_orthogroup_faa == 0:
@@ -32,8 +32,8 @@
             #end if
             #set num_orthogroup_fna = 0
             #for f in $os.listdir($src_dir):
-                #if $f.endswith('.fna')])
-                    set num_orthogroup_fna = $num_orthogroup_fna + 1
+                #if $f.endswith('.fna'):
+                    #set num_orthogroup_fna = $num_orthogroup_fna + 1
                 #end if
             #end for
             #set dest_dir = $output.extra_files_path