# HG changeset patch
# User greg
# Date 1490196992 14400
# Node ID 86b95e576d324db645a2ac08fd42ba8d3db22491
# Parent  98c2a9f97e83579154f0a849ca2066160d9c6e56
Uploaded

diff -r 98c2a9f97e83 -r 86b95e576d32 phylogenomics_analysis.xml
--- a/phylogenomics_analysis.xml	Wed Mar 22 11:29:46 2017 -0400
+++ b/phylogenomics_analysis.xml	Wed Mar 22 11:36:32 2017 -0400
@@ -20,8 +20,8 @@
                     #set multiple_sequence_alignments_option_cond = $options_type_cond.multiple_sequence_alignments_cond.multiple_sequence_alignments_option_cond
                     #set multiple_sequence_alignments_option = $multiple_sequence_alignments_option_cond.multiple_sequence_alignments_option
                 #end if
-                #set phylogenomic_trees_cond = $options_type_cond.phylogenetic_trees_cond
-                #set phylogenetic_trees = $phylogenomic_trees_cond.phylogenetic_trees
+                #set phylogenetic_trees_cond = $options_type_cond.phylogenetic_trees_cond
+                #set phylogenetic_trees = $phylogenetic_trees_cond.phylogenetic_trees
                 #set remove_gappy_sequences_cond = $options_type_cond.remove_gappy_sequences_cond
                 #set remove_gappy_sequences = $remove_gappy_sequences_cond.remove_gappy_sequences
             #end if
@@ -123,7 +123,6 @@
                     <when value="basic" />
                     <when value="advanced">
                         <expand macro="cond_multiple_sequence_alignments" />
-                        <expand macro="cond_phylogenomic_trees_ptortho" />
                         <expand macro="cond_remove_gappy_sequences" />
                     </when>
                 </conditional>
@@ -137,7 +136,6 @@
                     <when value="basic" />
                     <when value="advanced">
                         <expand macro="cond_multiple_sequence_alignments" />
-                        <expand macro="cond_phylogenomic_trees_ptorthocs" />
                         <expand macro="cond_remove_gappy_sequences" />
                         <expand macro="param_multiple_codon_alignments" />
                     </when>