# HG changeset patch
# User greg
# Date 1490639970 14400
# Node ID 7e8be10d79576ed856b87e5773d0f1cfa5f38969
# Parent  5e5db789406a42876333867fd349c499786ca22e
Uploaded

diff -r 5e5db789406a -r 7e8be10d7957 macros.xml
--- a/macros.xml	Mon Mar 27 13:51:09 2017 -0400
+++ b/macros.xml	Mon Mar 27 14:39:30 2017 -0400
@@ -130,7 +130,7 @@
         --max_orthogroup_size $max_orthogroup_size
     </token>
     <token name="@OUTPUT_ALN@">
-        #if str($input_format_cond['options_type_cond']['options_type']) == 'advanced' and ((str($input_format_cond['options_type_cond']['remove_gappy_sequences_cond']['remove_gappy_sequences']) == 'yes' and str($input_format_cond['options_type_cond']['remove_gappy_sequences_cond']['multiple_sequence_alignments_cond']['multiple_sequence_alignments']) == 'yes') or (str($input_format_cond['options_type_cond']['remove_sequences_with_gaps_cond']['remove_sequences_with_gaps'] == 'yes') and str($input_format_cond['options_type_cond']['remove_sequences_with_gaps_cond']['multiple_sequence_alignments_cond']['multiple_sequence_alignments']) == 'yes')):
+        #if str($input_format_cond['options_type_cond']['options_type']) == 'advanced' and ((str($input_format_cond['options_type_cond']['remove_gappy_sequences_cond']['remove_gappy_sequences']) == 'yes' and str($input_format_cond['options_type_cond']['remove_gappy_sequences_cond']['multiple_sequence_alignments_cond']['multiple_sequence_alignments']) == 'yes') or (str($input_format_cond['options_type_cond']['remove_gappy_sequences_cond']['remove_sequences_with_gaps_cond']['remove_sequences_with_gaps'] == 'yes') and str($input_format_cond['options_type_cond']['remove_gappy_sequences_cond']['remove_sequences_with_gaps_cond']['multiple_sequence_alignments_cond']['multiple_sequence_alignments']) == 'yes')):
             --output_aln '$output_aln'
             --output_aln_dir '$output_aln.files_path'
         #end if