# HG changeset patch
# User greg
# Date 1490637069 14400
# Node ID 5e5db789406a42876333867fd349c499786ca22e
# Parent  e0fa1e2105f6ae5e01a321694568677339ce5386
Uploaded

diff -r e0fa1e2105f6 -r 5e5db789406a macros.xml
--- a/macros.xml	Mon Mar 27 11:20:26 2017 -0400
+++ b/macros.xml	Mon Mar 27 13:51:09 2017 -0400
@@ -331,7 +331,7 @@
                         <option value="automated_trimming">Trim alignments using trimAl's ML heuristic trimming approach</option>
                     </param>
                     <when value="gap_trimming">
-                        <param name="gap_trimming" type="float" value="0.1" min="0" max="1.0" label="Remove sites in alignments with gaps of" help="0.1 removes sites with 90% gaps" />
+                        <param name="gap_trimming" type="float" value="0" min="0" max="1.0" label="Remove sites in alignments with gaps of" help="Zero value has no affect" />
                     </when>
                     <when value="automated_trimming" />
                 </conditional>
@@ -344,7 +344,7 @@
                         <expand macro="cond_multiple_sequence_alignments" />
                     </when>
                     <when value="yes">
-                        <param name="remove_sequences_with_gaps_of" type="float" value="0.5" min="0" max="1" label="Remove sequences with gaps of" help="0.5 removes sequences with 50% gaps" />
+                        <param name="remove_sequences_with_gaps_of" type="float" value="0" min="0" max="1" label="Remove sequences with gaps of" help="Zero value has no affect" />
                         <expand macro="cond_multiple_sequence_alignments_with_iterative_realignment" />
                     </when>
                 </conditional>