Mercurial > repos > greg > phylogenomics_analysis

diff phylogenomics_analysis.xml @ 105:e0fa1e2105f6 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author greg
date Mon, 27 Mar 2017 11:20:26 -0400
parents 5a5f380bbf48
children
line wrap: on
line diff
--- a/phylogenomics_analysis.xml	Mon Mar 27 11:00:32 2017 -0400
+++ b/phylogenomics_analysis.xml	Mon Mar 27 11:20:26 2017 -0400
@@ -103,16 +103,8 @@
                 --output_ptorthocs '$output_ptorthocs'
                 --output_ptorthocs_dir '$output_ptorthocs.files_path'
             #end if
-
-            #if str($multiple_sequence_alignments) == 'yes'
-                --output_aln '$output_aln'
-                --output_aln_dir '$output_aln.files_path'
-            #end if
-
-            #if str($phylogenetic_trees) == 'yes':
-                --output_tree '$output_tree'
-                --output_tree_dir '$output_tree.files_path'
-            #end if
+            @OUTPUT_ALN@
+            @OUTPUT_TREE@
         ]]>
     </command>
     <inputs>