diff phylogenomics_analysis.xml @ 63:c2d2ca6cf94b draft

Uploaded

--- a/phylogenomics_analysis.xml	Thu Feb 16 10:17:48 2017 -0500
+++ b/phylogenomics_analysis.xml	Thu Feb 16 10:21:36 2017 -0500
@@ -131,18 +131,18 @@
                 && echo -e "#Size\tName" > $output_fasta_ptorthocs
                 && ls -l $src_fasta_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_fasta_ptorthocs
             #end if
-            && mv $src_fasta_dir/* $dest_fasta_dir
+            && mv $src_fasta_dir/* $dest_fasta_dir || true
 
             #if $generate_output_aln:
                 && echo -e "#Size\tName" > $output_aln
                 && ls -l $src_aln_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_aln
-                && mv $src_aln_dir/* $dest_aln_dir
+                && mv $src_aln_dir/* $dest_aln_dir || true
             #end if
 
             #if $generate_output_tree:
                 && echo -e "#Size\tName" > $output_tree
                 && ls -l $src_tree_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_tree
-                && mv $src_tree_dir/* $dest_tree_dir
+                && mv $src_tree_dir/* $dest_tree_dir || true
             #end if
         ]]>
     </command>