Mercurial > repos > greg > phylogenomics_analysis
diff phylogenomics_analysis.xml @ 13:b37db5a8ed13 draft
Uploaded
| author | greg |
|---|---|
| date | Thu, 05 Jan 2017 15:15:47 -0500 |
| parents | 16861f56079f |
| children | a8a4f6009451 |
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--- a/phylogenomics_analysis.xml Thu Jan 05 15:13:37 2017 -0500 +++ b/phylogenomics_analysis.xml Thu Jan 05 15:15:47 2017 -0500 @@ -22,8 +22,8 @@ #set src_dir = $os.path.join('phylogenomicsAnalysis_dir', 'orthogroups_fasta') #set num_orthogroup_faa = 0 #for f in $os.listdir($src_dir): - #if $f.endswith('.faa')]) - set num_orthogroup_faa = $num_orthogroup_faa + 1 + #if $f.endswith('.faa'): + #set num_orthogroup_faa = $num_orthogroup_faa + 1 #end if #end for #if $num_orthogroup_faa == 0: @@ -32,8 +32,8 @@ #end if #set num_orthogroup_fna = 0 #for f in $os.listdir($src_dir): - #if $f.endswith('.fna')]) - set num_orthogroup_fna = $num_orthogroup_fna + 1 + #if $f.endswith('.fna'): + #set num_orthogroup_fna = $num_orthogroup_fna + 1 #end if #end for #set dest_dir = $output.extra_files_path