diff macros.xml @ 100:283f6666daf7 draft

Uploaded

--- a/macros.xml	Mon Mar 27 09:57:54 2017 -0400
+++ b/macros.xml	Mon Mar 27 10:42:37 2017 -0400
@@ -346,6 +346,26 @@
             <option value="yes">Yes</option>
         </param>
     </xml>
+    <xml name="output_ptortho">
+        <data name="output_ptortho" format="ptortho">
+            <filter>input_format_cond['input_format'] == 'ptortho'</filter>
+        </data>
+    </xml>
+    <xml name="output_ptorthocs">
+        <data name="output_ptorthocs" format="ptorthocs">
+            <filter>input_format_cond['input_format'] == 'ptorthocs'</filter>
+        </data>
+    </xml>
+    <xml name="output_aln">
+        <data name="output_aln" format="ptalign" label="${tool.name} on ${on_string} (multiple alignments)">
+            <filter>input_format_cond['options_type_cond']['options_type'] == 'advanced' and ((input_format_cond['options_type_cond']['remove_gappy_sequences_cond']['remove_gappy_sequences'] == 'yes and input_format_cond['options_type_cond']['remove_gappy_sequences_cond']['multiple_sequence_alignments_cond']['multiple_sequence_alignments'] == 'yes') or (input_format_cond['options_type_cond']['remove_sequences_with_gaps_cond']['remove_sequences_with_gaps'] == 'yes and input_format_cond['options_type_cond']['remove_sequences_with_gaps_cond']['multiple_sequence_alignments_cond']['multiple_sequence_alignments'] == 'yes'))</filter>
+        </data>
+    </xml>
+    <xml name="output_tree">
+        <data name="output_tree" format="pttree" label="${tool.name} on ${on_string} (phylogenetic trees)">
+            <filter>input_format_cond['options_type_cond']['options_type'] == 'advanced' and input_format_cond['options_type_cond']['phylogenetic_trees_cond']['phylogenetic_trees'] == 'yes'</filter>
+        </data>
+    </xml>
     <xml name="citations">
         <citations>
             <citation type="bibtex">