Mercurial > repos > greg > phylogenomics_analysis
comparison macros.xml @ 96:ffd50876ec2b draft
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| author | greg |
|---|---|
| date | Thu, 23 Mar 2017 09:23:49 -0400 |
| parents | 19a961b1cffa |
| children | 7389c8a99491 |
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| 95:19a961b1cffa | 96:ffd50876ec2b |
|---|---|
| 75 <xml name="param_multiple_sequence_alignments_option"> | 75 <xml name="param_multiple_sequence_alignments_option"> |
| 76 <param name="multiple_sequence_alignments_option" type="select" force_select="true" label="Select method for multiple sequence alignments"> | 76 <param name="multiple_sequence_alignments_option" type="select" force_select="true" label="Select method for multiple sequence alignments"> |
| 77 <expand macro="options_multiple_sequence_alignments_option" /> | 77 <expand macro="options_multiple_sequence_alignments_option" /> |
| 78 </param> | 78 </param> |
| 79 </xml> | 79 </xml> |
| 80 <xml name="cond_multiple_sequence_alignments_option_with_iterative_realignments"> | 80 <xml name="param_multiple_sequence_alignments_option_with_iterative_realignments"> |
| 81 <conditional name="multiple_sequence_alignments_option_cond"> | 81 <param name="multiple_sequence_alignments_option" type="select" force_select="true" label="Select method for multiple sequence alignments"> |
| 82 <param name="multiple_sequence_alignments_option" type="select" force_select="true" label="Select method for multiple sequence alignments"> | 82 <expand macro="options_multiple_sequence_alignments_option" /> |
| 83 <expand macro="options_multiple_sequence_alignments_option" /> | 83 <option value="iterative_realignments">Iterative orthogroups realignment, trimming and fitering</option> |
| 84 <option value="iterative_realignments">Iterative orthogroups realignment, trimming and fitering</option> | 84 </param> |
| 85 </param> | |
| 86 <expand macro="whens_multiple_sequence_alignments_option_cond" /> | |
| 87 <when value="iterative_realignments"> | |
| 88 <param name="iterative_realignments" type="integer" value="0" min="0" label="Maximum number of iterations" help="Zero value has no affect"/> | |
| 89 </when> | |
| 90 </conditional> | |
| 91 </xml> | 85 </xml> |
| 92 <xml name="whens_multiple_sequence_alignments_option_cond"> | 86 <xml name="whens_multiple_sequence_alignments_option_cond"> |
| 93 <when value="create_alignments" /> | 87 <when value="create_alignments" /> |
| 94 <when value="add_alignments" /> | 88 <when value="add_alignments" /> |
| 95 <when value="pasta_alignments"> | 89 <when value="pasta_alignments"> |
| 112 <conditional name="multiple_sequence_alignments_cond"> | 106 <conditional name="multiple_sequence_alignments_cond"> |
| 113 <expand macro="param_multiple_sequence_alignments" /> | 107 <expand macro="param_multiple_sequence_alignments" /> |
| 114 <when value="no" /> | 108 <when value="no" /> |
| 115 <when value="yes"> | 109 <when value="yes"> |
| 116 <conditional name="multiple_sequence_alignments_option_cond"> | 110 <conditional name="multiple_sequence_alignments_option_cond"> |
| 117 <expand macro="param_multiple_sequence_alignments_option" /> | 111 <expand macro="param_multiple_sequence_alignments_option_with_iterative_realignments" /> |
| 118 <expand macro="whens_multiple_sequence_alignments_option_cond" /> | 112 <expand macro="whens_multiple_sequence_alignments_option_cond" /> |
| 119 <expand macro="cond_multiple_sequence_alignments_option_with_iterative_realignments" /> | 113 <when value="iterative_realignments"> |
| 114 <param name="iterative_realignments" type="integer" value="0" min="0" label="Maximum number of iterations" help="Zero value has no affect"/> | |
| 115 </when> | |
| 120 </conditional> | 116 </conditional> |
| 121 </when> | 117 </when> |
| 122 </conditional> | 118 </conditional> |
| 123 </xml> | 119 </xml> |
| 124 <xml name="cond_phylogenetic_trees_ptortho"> | 120 <xml name="cond_phylogenetic_trees_ptortho"> |