comparison phylogenomics_analysis.xml @ 84:f0f02b73d5fe draft

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83:bcb75754f5e7

                    </when>
                </conditional>
            </when>
            <when value="ptorthocs">
                <param name="input_ptorthocs" format="ptorthocs" type="data" label="Precomputed orthologous gene family clusters with corresponding coding sequences" />
                <expand macro="param_orthogroup_fna" />
                <expand macro="param_scaffold" />
                <expand macro="param_method" />
                <conditional name="options_type_cond">
                    <expand macro="param_options_type" />
                    <when value="basic" />
                    <when value="advanced">
                        <expand macro="cond_multiple_sequence_alignments" />
                        <expand macro="cond_phylogenetic_trees_ptorthocs" />
                        <expand macro="cond_remove_gappy_sequences" />
                        <expand macro="param_multiple_codon_alignments" />
                    </when>
                </conditional>
            </when>
        </conditional>
    </inputs>
    <outputs>
        <data name="output_ptortho" format="ptortho">

84:f0f02b73d5fe

                    </when>
                </conditional>
            </when>
            <when value="ptorthocs">
                <param name="input_ptorthocs" format="ptorthocs" type="data" label="Precomputed orthologous gene family clusters with corresponding coding sequences" />
                <expand macro="param_scaffold" />
                <expand macro="param_method" />
                <expand macro="cond_orthogroup_fna" />
            </when>
        </conditional>
    </inputs>
    <outputs>
        <data name="output_ptortho" format="ptortho">