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comparison phylogenomics_analysis.xml @ 25:61c90d75c7cd draft

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author greg
date Sat, 07 Jan 2017 10:09:32 -0500
parents 99c91d79fdde
children e19872abae29
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24:99c91d79fdde 25:61c90d75c7cd
128 && echo "Sequence alignments and corresponding phylogenies: `ls $src_fasta_dir | wc -l` files" > $output_fasta 128 && echo "Sequence alignments and corresponding phylogenies: `ls $src_fasta_dir | wc -l` files" > $output_fasta
129 && ls $src_fasta_dir >> $output_fasta 129 && ls $src_fasta_dir >> $output_fasta
130 && mv $src_fasta_dir/* $dest_fasta_dir 130 && mv $src_fasta_dir/* $dest_fasta_dir
131 131
132 #if $generate_output_aln: 132 #if $generate_output_aln:
133 && echo "Sequence alignments, corresponding phylogenies and multiple sequence alignments using method '$multiple_sequence_alignments_option': `ls $src_aln_dir | wc -l` files" > $output_aln 133 && echo "Multiple sequence alignments using method '$multiple_sequence_alignments_option': `ls $src_aln_dir | wc -l` files" > $output_aln
134 && ls $src_aln_dir >> $output_aln 134 && ls $src_aln_dir >> $output_aln
135 && mv $src_aln_dir/* $dest_aln_dir 135 && mv $src_aln_dir/* $dest_aln_dir
136 #end if 136 #end if
137 137
138 #if $generate_output_tree: 138 #if $generate_output_tree: