Mercurial > repos > greg > phylogenomics_analysis

comparison phylogenomics_analysis.xml @ 16:4bb89dcc9642 draft

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author greg
date Fri, 06 Jan 2017 14:15:40 -0500
parents 34aa10ba20ef
children 7a6c7f3f9637
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15:34aa10ba20ef 16:4bb89dcc9642
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297 **Options** 297 **Options**
298 298
299 * **Select sequences classified into gene family clusters** - A history item with the label 'Sequences classified into gene family clusters on...'. 299 - **Select sequences classified into gene family clusters** - A history item with the label 'Sequences classified into gene family clusters on...'.
300 * **Orthogroups or gene families proteins scaffold** - PlantTribes scaffolds data. 300 - **Orthogroups or gene families proteins scaffold** - PlantTribes scaffolds data.
301 * **Protein clustering method** - One of GFam, OrthoFinder or OrthoMCL. 301 - **Protein clustering method** - One of GFam, OrthoFinder or OrthoMCL.
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303 * **Multiple sequence alignments options** 303 * **Multiple sequence alignments options**
304 304
305 - **Select process for multiple sequence alignments** - Process used for setting multiple sequence alignments. 305 - **Select process for multiple sequence alignments** - Process used for setting multiple sequence alignments.
306 - **Input sequences include corresponding coding sequences?** - Selecting 'Yes' for this option requires that 'Yes' was selected for the 'Create orthogroup fasta files?' option on the GeneFamilyClassifier tool when generating the selected input. This tool will produce an error if 'No' was selected. 306 - **Input sequences include corresponding coding sequences?** - Selecting 'Yes' for this option requires that 'Yes' was selected for the 'Create orthogroup fasta files?' option on the GeneFamilyClassifier tool when generating the selected input. This tool will produce an error if 'No' was selected.