Mercurial > repos > greg > phylogenomics_analysis

annotate test-data/assembly.fasta @ 48:4cde2d993ce5 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author greg
date Fri, 03 Feb 2017 13:57:27 -0500
parents 30c4554064f9
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
30c4554064f9 Uploaded
greg
parents:
diff changeset
1 >contig_1
30c4554064f9 Uploaded
greg
parents:
diff changeset
2 CGATTAACCATGTGTACAACATGACCAATTATGGCCGATCTTGCTTGTTCAGGAGTCTCA
30c4554064f9 Uploaded
greg
parents:
diff changeset
3 CTCATCATTCCAAAATCAAGAAAAGCAAGCTTCCCGTCAGGTGTAGCTAAGAGATTCCCT
30c4554064f9 Uploaded
greg
parents:
diff changeset
4 GGGTGAGGATCTGCATGAAAATAGCCGTACTCAAGCAGCTGTCGAAGACTGCACTGTATG
30c4554064f9 Uploaded
greg
parents:
diff changeset
5 CCGGTATTCACCAGATCCAGAACACTGAGCCCTTGACTCTCAACGGCATCTTGCTCATTT
30c4554064f9 Uploaded
greg
parents:
diff changeset
6 AATTTAACACCTTCAACCCACTCCATTGTTAGCACCTTTCCACTCGTGTAATCCCAGAAA
30c4554064f9 Uploaded
greg
parents:
diff changeset
7 ATATCTGGGACAAGGATATCTTCCTTGTCTCCATATAATTTTTTAA
30c4554064f9 Uploaded
greg
parents:
diff changeset
8 >contig_2
30c4554064f9 Uploaded
greg
parents:
diff changeset
9 CCTTTCCAAGGTACCCATCCCATCCAACAACATATATGCTATAAATGATAAGAAGTCCCC
30c4554064f9 Uploaded
greg
parents:
diff changeset
10 GGAAGATGCAGCAGACGACTACGAAAACCGCCTCAAGGAACTCGTCTCCGAAAAAATCAT
30c4554064f9 Uploaded
greg
parents:
diff changeset
11 ACCCGTTTCAACCATTAGCGGGTTCCCGAAGTTCGACCTCATGTTGCTTGGAATGGGGCC
30c4554064f9 Uploaded
greg
parents:
diff changeset
12 CGACGGCCATGTGGCCTCTCTTTTCCCTTCTCACATGCAACGCTATGAGAAGGAGAAATG
30c4554064f9 Uploaded
greg
parents:
diff changeset
13 GGTCACTTTCATAACTGACTCTCCCAAACCGCCTCCGTCGAGAATCACTTTTACGTTTCC
30c4554064f9 Uploaded
greg
parents:
diff changeset
14 GATGATCAACTCGGCTTCGGAGATCGCTATGGTGGTTACCGGGGCTGATTTGGCTGGTAC
30c4554064f9 Uploaded
greg
parents:
diff changeset
15 AACTAAGATAGCATTGGGTACTACGGGCAATGTTAAGCCGGGTGAGACTCCTTTGCCTTG
30c4554064f9 Uploaded
greg
parents:
diff changeset
16 TACTGAAGTTTCGGCTGAGGGAGAGGTTACTTGGTTCTTGGACAAAGATGCTGCTTCACA
30c4554064f9 Uploaded
greg
parents:
diff changeset
17 ACTGTTAAATTATGTGCGCTTTGATGATTAAAAACACGGGGTAATTGAACTCAAGGGATG
30c4554064f9 Uploaded
greg
parents:
diff changeset
18 GTTGAGAATTGTAATATTTCTGTAAGTGTCGGGGGATGGTTGAAATGCTTTTTATTATGA
30c4554064f9 Uploaded
greg
parents:
diff changeset
19 AGTGTTAAAATGTAAGATAAA
30c4554064f9 Uploaded
greg
parents:
diff changeset
20 >contig_3
30c4554064f9 Uploaded
greg
parents:
diff changeset
21 CGGGGGCAAGGTTTACATGAAAGTACATCTACAGGACCTAGATAAGCATCATCACCTGAC
30c4554064f9 Uploaded
greg
parents:
diff changeset
22 AAAAAGCCATACATAGTAACACTTGCTAGTTGATCTGTGAAAATGGTGCACGAGTCGTAA
30c4554064f9 Uploaded
greg
parents:
diff changeset
23 CAGACGGCATTAGTTCCTTTCCTGTAACAGCAGATTCGTATGAATGGTTTTCTCGAAATT
30c4554064f9 Uploaded
greg
parents:
diff changeset
24 CTTCTTCAAGTGCATCTATAGGCATGGCACGAAGTGACTCTATTGTGCCTTTGCTGGGAA
30c4554064f9 Uploaded
greg
parents:
diff changeset
25 TATCCGGCTCGCTCCTAACTGGCGTGGACCCTGTAGGCTCGTAATCCATGTATTTTTGCC
30c4554064f9 Uploaded
greg
parents:
diff changeset
26 TGAAAGTATCATTCGTGTGCTGTTCGATACAGGATACCTGCTGGGAATGATCTCTCTTAA
30c4554064f9 Uploaded
greg
parents:
diff changeset
27 GGTTCTCAATTGTTTCTGAATGAGCTCTAGCAGTTGTCAGAATTTCAGAAACAGATGCCT
30c4554064f9 Uploaded
greg
parents:
diff changeset
28 TCTCCTGCTCTGACAAGCCAGCAACAACAACTCCTTCATCCACA
30c4554064f9 Uploaded
greg
parents:
diff changeset
29 >contig_4
30c4554064f9 Uploaded
greg
parents:
diff changeset
30 CTGACGATGTTCATATTCATGCCACTCTAAATGTATGCCATCCATGTTGAGGAGAAATGC
30c4554064f9 Uploaded
greg
parents:
diff changeset
31 TTGTGTAAAGAAGAAACTGGAGTCAAGCGGTCCCGGTTTTACAGTTGAACGTTGCTCTAA
30c4554064f9 Uploaded
greg
parents:
diff changeset
32 ATTAGTCAAAGTACCCGACTACCCGCTCATCAAACTGGCGAGCTCGTTTTCCTCGCCGCC
30c4554064f9 Uploaded
greg
parents:
diff changeset
33 CTACTCGGTGTCTTGGCGGGGCACATGGGGGTGGCGTGTGGCGTGCGGGGATGCGACAAC
30c4554064f9 Uploaded
greg
parents:
diff changeset
34 ATCATAAATTCATAATCGAAGG
30c4554064f9 Uploaded
greg
parents:
diff changeset
35 >contig_5
30c4554064f9 Uploaded
greg
parents:
diff changeset
36 GTGAGAGTGTCGCCTTTTCCATGCTACCCCTTTCCAGATCTGACTTGTTCGAACCTTCCA
30c4554064f9 Uploaded
greg
parents:
diff changeset
37 TCATCCGGTTCGACGTCAGCAGTCGGTCCTTCTTCTCCAAGCACGAGAGCAGACGGTGCG
30c4554064f9 Uploaded
greg
parents:
diff changeset
38 AGAGCGAGCAAAGACTCGCCTGCCGCGCCTCTCGTGACCTGGCTCGCATCTCCAGGATTC
30c4554064f9 Uploaded
greg
parents:
diff changeset
39 ATGGCTCCTTAGCTCGCCCTTCTTCGATACTTCGCTAGACGCCCGAGGACGTCATCGAAG
30c4554064f9 Uploaded
greg
parents:
diff changeset
40 GCGAGGGTCGGCACAACGGAGTGCTCCTTGCATGATGTCGGGGCCTGGCATCACGCGGCA
30c4554064f9 Uploaded
greg
parents:
diff changeset
41 TCGGCCAAATCGTCCCTCTCGACGTGCGTCACGGAGAGGGCCGAGCGCCGGGACGACCGC
30c4554064f9 Uploaded
greg
parents:
diff changeset
42 GTGGAAGAGCCCGCGGGATGCGGGATCCCGCTTGACGTGTGTTTGTGGCGGACCACCG
30c4554064f9 Uploaded
greg
parents:
diff changeset
43 >contig_6
30c4554064f9 Uploaded
greg
parents:
diff changeset
44 TATAACAATTCAAAATATTCCTATGAAAACCAAGACCAGAGGCAACACCGGTATAACCAA
30c4554064f9 Uploaded
greg
parents:
diff changeset
45 AGCCAGAGGCAATATCCCTTTATTCTTCGGGAACAGAAAAATACACGATATGCTACAGAC
30c4554064f9 Uploaded
greg
parents:
diff changeset
46 AAAAAAATAAATCCAAACCATTCTTCTGTGCATAAACATTGTAAAAGTTTATTAGACCGC
30c4554064f9 Uploaded
greg
parents:
diff changeset
47 TGTAAAACTCGTAAATGAAATCCCTGGCAATTGAATCTGTTAAACCTGCTCC
30c4554064f9 Uploaded
greg
parents:
diff changeset
48 >contig_7
30c4554064f9 Uploaded
greg
parents:
diff changeset
49 GAGAATGAGTGGTCTGGGGCTGAGTTTTTGAATGAAATGGCGGCAATGATGACTCAAAAT
30c4554064f9 Uploaded
greg
parents:
diff changeset
50 AAATCCAATGAAAACGGAACCGGAACTTTTGAAGAACTGCAACAATTGTTCGATGAAATG
30c4554064f9 Uploaded
greg
parents:
diff changeset
51 TTTCAGAGCGACATCGAGTCCTTCAATGGTTGTTCTTCATCATCCAATGAAACATGTAGC
30c4554064f9 Uploaded
greg
parents:
diff changeset
52 AACTCGAACAAGAGGAATTCCATTGAGTCGAGCTCGGCTAATTTCAGACCCGAAAATGCG
30c4554064f9 Uploaded
greg
parents:
diff changeset
53 AAACGAAAGCGGCGAGATTAGCGGGAAGAAGAATACTAGGAAAGGTAAAGGTGACG
30c4554064f9 Uploaded
greg
parents:
diff changeset
54 >contig_8
30c4554064f9 Uploaded
greg
parents:
diff changeset
55 TGGCATGAAGTCGGCTCGACTCGTGCCCGCTCGTCTATAGACGAATTGAGCTAGATTCAC
30c4554064f9 Uploaded
greg
parents:
diff changeset
56 TCATTCCATGAACTCGACTCGTTCATGAGTCGGCTCGTAGTTGTCCGGACTCGCTCCATG
30c4554064f9 Uploaded
greg
parents:
diff changeset
57 GCCAGCTCTACAACAGACTGCCTGTATGTAGATGATTGTATTGATTTGTTCTTCTCTTGT
30c4554064f9 Uploaded
greg
parents:
diff changeset
58 TTAAATCCAACCAAATATCAACATGATATTTGCAATTTC
30c4554064f9 Uploaded
greg
parents:
diff changeset
59 >contig_9
30c4554064f9 Uploaded
greg
parents:
diff changeset
60 ACTTCGGTTAAAGGCAGATGAGGAGGCACAATGTTTGAATCAGATGCAGCGTATCATTTT
30c4554064f9 Uploaded
greg
parents:
diff changeset
61 TGATGAAATTATGGAGCATGTGGAGTTAGAAAAGGGGGGCTTCTATTTCGTATATCGCCC
30c4554064f9 Uploaded
greg
parents:
diff changeset
62 TGGGGGCAACGGAAAGACCTTGTGGTTGGCTATTATCTCAAAACTGAGAAGCGAGGGTAG
30c4554064f9 Uploaded
greg
parents:
diff changeset
63 AATAGTTCTCGCAGTGGCTTCATCAGGTATAGCATTGCTTTTGGTTGAGGGTGGTAGAAC
30c4554064f9 Uploaded
greg
parents:
diff changeset
64 AGCCCATTCTCGATTTAAAATACCCATAGATGTCAATGAATATAACAATTGTGAAATTAA
30c4554064f9 Uploaded
greg
parents:
diff changeset
65 ACAGAACATCTACCTCGCTGAACTTATATGTCACACCAATTTGGTCATTTGGGATGAGGC
30c4554064f9 Uploaded
greg
parents:
diff changeset
66 ACCTATGACTCAATATTTTGTCTTTGAGGCGGTTGA
30c4554064f9 Uploaded
greg
parents:
diff changeset
67 >contig_10
30c4554064f9 Uploaded
greg
parents:
diff changeset
68 GGGGCATTGCCGCCGATTAATTCGAGCGCGAGGTTTCGCGTATCAGGCGGAATTGGGATT
30c4554064f9 Uploaded
greg
parents:
diff changeset
69 TGGCGCCACAAAGAGCGCCACCTATGATTTCTGTGGCGGACGACTTCACGAACTCGGACG
30c4554064f9 Uploaded
greg
parents:
diff changeset
70 GGACTATCTAACCAATCTTCCAAGTTCATTGCGACATCAGTATAAGGGCGTGATGAAGGT
30c4554064f9 Uploaded
greg
parents:
diff changeset
71 TCGCTATCGTCGCTTGAGTTATTGATGGGGCCCAAATTGAGATCGAGGTTCATTGTAGTG
30c4554064f9 Uploaded
greg
parents:
diff changeset
72 GTGTTCTCTTCTGCCATTTGAGAATTTCACAAGTTCTAACAAACGAAAACGCAAATCTTC
30c4554064f9 Uploaded
greg
parents:
diff changeset
73 GGGACTAATATGCAGAATTTCCCTAAATAGAAGGGGTTTAAAA