comparison macros.xml @ 51:4c5540844bb3 draft default tip

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50:20687c85887e

    <xml name="motif_finding_params">
        <param name="memenmotifs" type="integer" min="0" value="3" label="Number of motifs MEME should find for each condition" />
        <param name="mememinw" type="integer" min="0" value="6" label="Minimum motif width for MEME" />
        <param name="mememaxw" type="integer" min="0" value="16" label="Maximum motif width for MEME" />
    </xml>
</macros>

51:4c5540844bb3

    <xml name="motif_finding_params">
        <param name="memenmotifs" type="integer" min="0" value="3" label="Number of motifs MEME should find for each condition" />
        <param name="mememinw" type="integer" min="0" value="6" label="Minimum motif width for MEME" />
        <param name="mememaxw" type="integer" min="0" value="16" label="Maximum motif width for MEME" />
    </xml>
    <xml name="param_experiment_type">
        <param name="experiment_type" type="select" display="radio" label="Experiment type for this replicate">
            <option value="chipseq" selected="True">ChIP-seq</option>
            <option value="chipexo">ChIP-exo</option>
        </param>
    </xml>
    <xml name="cond_fixedreadcount">
        <conditional name="fixedreadcount_cond">
            <param  name="fixedreadcount_select" type="select" label="Set fixed per-base read count limit for this replicate?" help="Selecting No uses a global per-base limit that is estimated from a Poisson distribution.">
                <option value="no" selected="True">No</option>
                <option value="yes">Yes</option>
            </param>
            <when value="no"/>
            <when value="yes">
                <param name="fixedreadcount" type="integer" value="0" min="0" label="Fixed per-base read count limit"/>
            </when>
        </conditional>
    </xml>
</macros>