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comparison test-data/prior30.plib @ 0:d0dd3c0acdca draft default tip

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author greg
date Mon, 11 Jan 2016 13:33:25 -0500
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-1:000000000000 0:d0dd3c0acdca
1 Alphabet= ACDEFGHIKLMNPQRSTVWY
2 NumDistr= 30
3 Number= 0
4 Mixture= 0.055795
5 B= 5.623820
6 Alpha= 0.0855491 0.0221831 0.0111063 0.0209959 0.0505726 0.025437 0.0155389 0.132951 0.0247865 0.150287 0.0577239 0.0209317 0.0166629 0.0220905 0.0244295 0.0497608 0.070277 0.157532 0.0102219 0.0309633
7 FullUpdate= 1
8 QUpdate= 1
9 StructID= 0
10 Comment= HMM9.4 reestimated in henikoff29.2
11
12 Number= 1
13 Mixture= 0.198333
14 B= 0.097240
15 Alpha= 0.0562629 0.0329597 0.0692513 0.0385232 0.0400041 0.143573 0.0428939 0.0226244 0.0442102 0.0665467 0.0117853 0.0447655 0.0833299 0.0395825 0.0611271 0.0588852 0.0513472 0.0317153 0.0237865 0.0368161
16 FullUpdate= 1
17 QUpdate= 1
18 StructID= 24
19 Comment= Outside
20
21 Number= 2
22 Mixture= 0.043566
23 B= 1.648336
24 Alpha= 0.0144564 0.00845337 0.00785519 0.00864933 0.255959 0.0110815 0.0509526 0.0234533 0.0120443 0.0561967 0.015111 0.0190974 0.00857653 0.0167812 0.0164918 0.0197108 0.0151013 0.0252782 0.050139 0.364613
25 FullUpdate= 1
26 QUpdate= 1
27 StructID= 26
28 Comment= Inside
29
30 Number= 3
31 Mixture= 0.060170
32 B= 2.595432
33 Alpha= 0.0452144 0.00587917 0.169731 0.0751478 0.00749471 0.0845832 0.0369819 0.00610072 0.0548186 0.011029 0.00382749 0.212785 0.0206532 0.0416705 0.0280716 0.117267 0.0533742 0.00943157 0.00216149 0.0137784
34 FullUpdate= 1
35 QUpdate= 1
36 StructID= 19
37 Comment= Outside Alpha
38
39 Number= 4
40 Mixture= 0.065466
41 B= 3.112271
42 Alpha= 0.0361167 0.0049157 0.0134924 0.0461325 0.00557631 0.0209043 0.0302551 0.016425 0.307554 0.0338255 0.0139435 0.0360733 0.0127659 0.0873761 0.222668 0.0369042 0.0354442 0.0228891 0.00434827 0.0123906
43 FullUpdate= 1
44 QUpdate= 1
45 StructID= 21
46 Comment= Outside Beta
47
48 Number= 5
49 Mixture= 0.067614
50 B= 2.053644
51 Alpha= 0.0194362 0.00765176 0.00188738 0.00372898 0.0849894 0.00421787 0.00400459 0.152735 0.00407958 0.4568 0.106051 0.00304386 0.00545956 0.00900935 0.00605071 0.00519029 0.016255 0.0861045 0.00787965 0.0154248
52 FullUpdate= 1
53 QUpdate= 1
54 StructID= 22
55 Comment= Inside alpha
56
57 Number= 6
58 Mixture= 0.080724
59 B= 2.138987
60 Alpha= 0.0423172 0.0153891 0.00409306 0.00565735 0.0197117 0.00590607 0.00139926 0.307863 0.00544884 0.115721 0.0285808 0.00522771 0.00474851 0.00328193 0.00351054 0.00892385 0.0348922 0.380003 0.00117673 0.00614917
61 FullUpdate= 1
62 QUpdate= 1
63 StructID= 23
64 Comment= Inside beta
65
66 Number= 7
67 Mixture= 0.051030
68 B= 3.878926
69 Alpha= 0.0548123 0.000759746 0.144127 0.46019 0.00249502 0.0192754 0.0106535 0.00938765 0.0562429 0.0163148 0.00717389 0.0245612 0.0177482 0.0744802 0.0199233 0.0323535 0.0257651 0.018574 0.00087086 0.00429088
70 FullUpdate= 1
71 QUpdate= 1
72 StructID= 23
73 Comment= Alpha helix
74
75 Number= 8
76 Mixture= 0.103529
77 B= 1.486325
78 Alpha= 0.315754 0.0384546 0.0116388 0.0133665 0.0111126 0.107921 0.00752325 0.0154885 0.0111281 0.0231087 0.011626 0.0228375 0.0304785 0.0166632 0.0156345 0.186379 0.0954421 0.0546691 0.00351538 0.00725682
79 FullUpdate= 1
80 QUpdate= 1
81 StructID= 23
82 Comment= Beta strand
83
84 Number= 9
85 Mixture= 0.062940
86 B= 8.221215
87 Alpha= 0.0869919 0.00672577 0.0600995 0.10763 0.0153489 0.0378086 0.0325335 0.023388 0.113765 0.041623 0.0196906 0.0625344 0.0262599 0.0788667 0.0707399 0.0886634 0.0666777 0.0361472 0.00484308 0.0196629
88 FullUpdate= 1
89 QUpdate= 1
90 StructID= 23
91 Comment= Other
92
93 Number= 10
94 Mixture= 0.012518
95 B= 38.955631
96 Alpha= 0.732922 0.0145131 0.00623235 0.00951423 0.00717778 0.0289521 0.00351664 0.0125081 0.00886593 0.0183651 0.00832812 0.00670968 0.00364556 0.00622169 0.00812899 0.0582399 0.0205067 0.0394327 0.00207485 0.00414489
97 FullUpdate= 1
98 QUpdate= 1
99 StructID= 0
100 Comment= A
101
102 Number= 11
103 Mixture= 0.004953
104 B= 381.562195
105 Alpha= 0.00563239 0.959814 0.00144129 0.00213042 0.00158645 0.00168393 0.000989765 0.00325263 0.00148501 0.00343924 0.00168673 0.00159054 0.00121534 0.00129942 0.00195209 0.00296106 0.0039912 0.00266944 0.000327808 0.000851203
106 FullUpdate= 1
107 QUpdate= 1
108 StructID= 0
109 Comment= C
110
111 Number= 12
112 Mixture= 0.013849
113 B= 90.727570
114 Alpha= 0.00897115 0.00169015 0.859473 0.0360829 0.00269485 0.00606504 0.00469816 0.00400134 0.0047981 0.00514968 0.00208395 0.029754 0.00241276 0.0045506 0.00433816 0.0088208 0.00511143 0.00527448 0.00104469 0.00298475
115 FullUpdate= 1
116 QUpdate= 1
117 StructID= 0
118 Comment= D
119
120 Number= 13
121 Mixture= 0.008388
122 B= 404.591034
123 Alpha= 0.00241514 0.000413991 0.0122981 0.96369 0.000665578 0.00187461 0.00106904 0.00149214 0.00121548 0.00129791 0.000554145 0.00253496 0.000624495 0.00316839 0.00115045 0.00171781 0.001468 0.0014564 0.000278652 0.000614791
124 FullUpdate= 1
125 QUpdate= 1
126 StructID= 0
127 Comment= E
128
129 Number= 14
130 Mixture= 0.008064
131 B= 83.323669
132 Alpha= 0.00839779 0.00428348 0.00298116 0.00358128 0.850936 0.00329382 0.00196832 0.0130534 0.00320345 0.0351883 0.00729724 0.00287304 0.00358482 0.00218728 0.00264753 0.00833798 0.00418729 0.0120684 0.00448366 0.025446
133 FullUpdate= 1
134 QUpdate= 1
135 StructID= 0
136 Comment= F
137
138 Number= 15
139 Mixture= 0.032205
140 B= 32.644871
141 Alpha= 0.0234448 0.00236512 0.0112957 0.00811395 0.00248143 0.868718 0.00345598 0.00342985 0.00859682 0.0040966 0.00239339 0.012342 0.00423123 0.00440054 0.00795347 0.0165095 0.0065024 0.00550512 0.00140604 0.00275817
142 FullUpdate= 1
143 QUpdate= 1
144 StructID= 0
145 Comment= G
146
147 Number= 16
148 Mixture= 0.005033
149 B= 35.520824
150 Alpha= 0.0100058 0.00386024 0.0131498 0.0108984 0.0122851 0.00738691 0.722249 0.00521193 0.00686054 0.0150103 0.00673014 0.0367074 0.00625526 0.0429912 0.0234127 0.0187246 0.0128445 0.00837399 0.00390723 0.0331349
151 FullUpdate= 1
152 QUpdate= 1
153 StructID= 0
154 Comment= H
155
156 Number= 17
157 Mixture= 0.007454
158 B= 101.265472
159 Alpha= 0.0106938 0.00267663 0.00404166 0.00466637 0.00838963 0.00372808 0.00182575 0.681615 0.0059102 0.0770333 0.0184335 0.004676 0.0027124 0.00372663 0.00418165 0.00773357 0.0109237 0.140679 0.00140417 0.00494911
160 FullUpdate= 1
161 QUpdate= 1
162 StructID= 0
163 Comment= I
164
165 Number= 18
166 Mixture= 0.009400
167 B= 150.415985
168 Alpha= 0.00688657 0.00169711 0.00222738 0.00346887 0.00115861 0.00302866 0.00209171 0.00400905 0.903944 0.0037747 0.00186061 0.00449531 0.00249618 0.00324487 0.041775 0.00392196 0.00461714 0.00296607 0.000893256 0.00144282
169 FullUpdate= 1
170 QUpdate= 1
171 StructID= 0
172 Comment= K
173
174 Number= 19
175 Mixture= 0.017057
176 B= 31.896633
177 Alpha= 0.0114646 0.00367926 0.00296188 0.00596126 0.0190009 0.00382486 0.00338381 0.0401936 0.00650072 0.790038 0.031659 0.00392791 0.0050046 0.00753591 0.00771818 0.00748621 0.0101555 0.0312597 0.00242405 0.00581952
178 FullUpdate= 1
179 QUpdate= 1
180 StructID= 0
181 Comment= L
182
183 Number= 20
184 Mixture= 0.002761
185 B= 201.346268
186 Alpha= 0.00353933 0.00165628 0.0014931 0.00161065 0.00279831 0.00194259 0.00101868 0.00969101 0.00211316 0.0217036 0.928022 0.00162899 0.0015681 0.0015629 0.00138977 0.00294601 0.00311476 0.00723178 0.00156295 0.00340569
187 FullUpdate= 1
188 QUpdate= 1
189 StructID= 0
190 Comment= M
191
192 Number= 21
193 Mixture= 0.005734
194 B= 108.343185
195 Alpha= 0.0067512 0.00239062 0.0140378 0.0043452 0.00365788 0.00689345 0.0148828 0.00715373 0.00789036 0.00614036 0.00289697 0.858995 0.00399721 0.00770961 0.00570515 0.0238176 0.011602 0.00591549 0.00167893 0.00353897
196 FullUpdate= 1
197 QUpdate= 1
198 StructID= 0
199 Comment= N
200
201 Number= 22
202 Mixture= 0.022818
203 B= 15.153304
204 Alpha= 0.0417987 0.00360232 0.0113792 0.0152366 0.00564775 0.0123795 0.00606957 0.0091353 0.0165122 0.0167265 0.00490487 0.00915437 0.755604 0.0131375 0.012587 0.0283392 0.0189623 0.0140029 0.0012848 0.00353553
205 FullUpdate= 1
206 QUpdate= 1
207 StructID= 0
208 Comment= P
209
210 Number= 23
211 Mixture= 0.005931
212 B= 79.417511
213 Alpha= 0.0142993 0.00266984 0.0053289 0.0321605 0.0028715 0.00426743 0.0257509 0.00565307 0.0106106 0.0161186 0.00955753 0.0104696 0.00638107 0.807311 0.0149106 0.0111968 0.00889459 0.00681482 0.00206658 0.00266624
214 FullUpdate= 1
215 QUpdate= 1
216 StructID= 0
217 Comment= Q
218
219 Number= 24
220 Mixture= 0.011491
221 B= 93.103897
222 Alpha= 0.00756896 0.00314197 0.00296652 0.00327634 0.00194604 0.00467894 0.00721049 0.00406061 0.0277257 0.00663852 0.00217868 0.00577047 0.00473306 0.00953551 0.889701 0.00650859 0.00506022 0.00294281 0.00205549 0.00230062
223 FullUpdate= 1
224 QUpdate= 1
225 StructID= 0
226 Comment= R
227
228 Number= 25
229 Mixture= 0.008219
230 B= 47.504795
231 Alpha= 0.0284818 0.00697155 0.00749796 0.00604665 0.00515171 0.00954817 0.00380684 0.00637929 0.0104463 0.00908885 0.00471437 0.0194592 0.00711823 0.00611827 0.00979722 0.707416 0.139256 0.00656298 0.0015377 0.00460086
232 FullUpdate= 1
233 QUpdate= 1
234 StructID= 0
235 Comment= S
236
237 Number= 26
238 Mixture= 0.019050
239 B= 14.027470
240 Alpha= 0.0247201 0.00718027 0.00845584 0.0076239 0.00600101 0.0073401 0.00492149 0.0173757 0.0129878 0.0125773 0.0100452 0.0230424 0.00659406 0.0110314 0.0112037 0.107763 0.690341 0.0249364 0.00193884 0.00392074
241 FullUpdate= 1
242 QUpdate= 1
243 StructID= 0
244 Comment= T
245
246 Number= 27
247 Mixture= 0.007047
248 B= 76.958153
249 Alpha= 0.0447488 0.00734525 0.00576457 0.00805666 0.00714188 0.00593389 0.0041663 0.0688592 0.00714299 0.0255115 0.00800708 0.00501678 0.00632646 0.00492002 0.00812967 0.0100074 0.0240134 0.745035 0.00126243 0.00261056
250 FullUpdate= 1
251 QUpdate= 1
252 StructID= 0
253 Comment= V
254
255 Number= 28
256 Mixture= 0.003957
257 B= 150.973328
258 Alpha= 0.00517343 0.00213336 0.00350645 0.00390297 0.018439 0.0041919 0.0023655 0.00404231 0.00420998 0.0171406 0.00379068 0.00363696 0.00245861 0.00387467 0.00502035 0.00465674 0.00417283 0.00620977 0.888513 0.012561
259 FullUpdate= 1
260 QUpdate= 1
261 StructID= 0
262 Comment= W
263
264 Number= 29
265 Mixture= 0.004904
266 B= 30.653225
267 Alpha= 0.0342049 0.00809912 0.0126852 0.0174701 0.156033 0.0118268 0.0431342 0.0204751 0.0164439 0.0363664 0.0129811 0.0131986 0.0103037 0.0116235 0.0159032 0.0287792 0.0176143 0.024986 0.0131845 0.494687
268 FullUpdate= 1
269 QUpdate= 1
270 StructID= 0
271 Comment= Y
272
273 /* $Header$ */
274 /* $Header$ */
275 /* $Header$ */