comparison ks_distribution.R @ 61:c19c48db9f79 draft

Uploaded

60:ae25785e78e1

option_list <- list(
    make_option(c("-c", "--components_input"), action="store", dest="components_input", help="Ks significant components input dataset"),
    make_option(c("-k", "--kaks_input"), action="store", dest="kaks_input", help="KaKs analysis input dataset"),
    make_option(c("-n", "--number_comp"), action="store", dest="number_comp", type="integer", help="Number of significant components in the Ks distribution"),
    make_option(c("-o", "--output"), action="store", dest="output", help="Output dataset"),
    make_option(c("-s", "--specified_colors"), action="store", dest="specified_colors", default=NA, help="List of component colors")
)

parser <- OptionParser(usage="%prog [options] file", option_list=option_list)
args <- parse_args(parser, positional_arguments=TRUE)
opt <- args$options

set_component_colors = function(colors, number_comp)
{
    # Handle colors for components.
    if (is.na(colors)) {
        # Randomly specify colors for components.
        component_colors <- c('red', 'yellow', 'green', 'black', 'blue', 'darkorange')
    } else {
        # Handle selected colors for components.
        component_colors <- c()

61:c19c48db9f79

option_list <- list(
    make_option(c("-c", "--components_input"), action="store", dest="components_input", help="Ks significant components input dataset"),
    make_option(c("-k", "--kaks_input"), action="store", dest="kaks_input", help="KaKs analysis input dataset"),
    make_option(c("-n", "--number_comp"), action="store", dest="number_comp", type="integer", help="Number of significant components in the Ks distribution"),
    make_option(c("-o", "--output"), action="store", dest="output", help="Output dataset"),
    make_option(c("-s", "--specified_colors"), action="store", dest="specified_colors", default=NULL, help="List of component colors")
)

parser <- OptionParser(usage="%prog [options] file", option_list=option_list)
args <- parse_args(parser, positional_arguments=TRUE)
opt <- args$options

set_component_colors = function(colors, number_comp)
{
    # Handle colors for components.
    if (is.null(colors)) {
        # Randomly specify colors for components.
        component_colors <- c('red', 'yellow', 'green', 'black', 'blue', 'darkorange')
    } else {
        # Handle selected colors for components.
        component_colors <- c()