comparison ks_distribution.R @ 42:60e2cf57f2c1 draft

Uploaded

41:17ca41359a2d

option_list <- list(
    make_option(c("-c", "--components_input"), action="store", dest="components_input", help="Ks significant components input dataset"),
    make_option(c("-k", "--kaks_input"), action="store", dest="kaks_input", help="KaKs analysis input dataset"),
    make_option(c("-n", "--number_comp"), action="store", dest="number_comp", type="integer", help="Number of significant components in the Ks distribution"),
    make_option(c("-o", "--output"), action="store", dest="output", help="Output dataset"),
    make_option(c("-r", "--colors"), action="store", default=NA, help="List of component colors")
)

parser <- OptionParser(usage="%prog [options] file", option_list=option_list)
args <- parse_args(parser, positional_arguments=TRUE)
opt <- args$options

set_component_colors = function(colors, number_comp)
{
    # Handle colors for components.
    if (is.na(colors))
    {
        # Randomly specify colors for components.
        specified_colors <- c('red', 'yellow', 'green', 'black', 'blue', 'darkorange')
    }
    else

42:60e2cf57f2c1

option_list <- list(
    make_option(c("-c", "--components_input"), action="store", dest="components_input", help="Ks significant components input dataset"),
    make_option(c("-k", "--kaks_input"), action="store", dest="kaks_input", help="KaKs analysis input dataset"),
    make_option(c("-n", "--number_comp"), action="store", dest="number_comp", type="integer", help="Number of significant components in the Ks distribution"),
    make_option(c("-o", "--output"), action="store", dest="output", help="Output dataset"),
    make_option(c("-r", "--colors"), action="store", default="", help="List of component colors")
)

parser <- OptionParser(usage="%prog [options] file", option_list=option_list)
args <- parse_args(parser, positional_arguments=TRUE)
opt <- args$options

set_component_colors = function(colors, number_comp)
{
    # Handle colors for components.
    if (nchar(colors) == 0)
    {
        # Randomly specify colors for components.
        specified_colors <- c('red', 'yellow', 'green', 'black', 'blue', 'darkorange')
    }
    else