comparison kaks_distribution.xml @ 5:8d18cb8396a7 draft default tip

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5:8d18cb8396a7

<tool id="kaks_barplot" name="KaKsDistribution" version="1.0.0">
    <description>plots synonymous (ks) distribution and fit significant component</description>
    <requirements>
         <requirement type="package" version="1.3.0">r-optparse</requirement>
    </requirements>
    <command>
        <![CDATA[
            Rscript $__tool_directory__/kaks_distribution.R
            -k '${kaks}'
            -c '${components}'
            -o "$output"
        ]]>
    </command>
    <inputs>
        <param name="kaks" format="tabular" type="data" label="KaKs analysis file" />
        <param name="components" format="tabular" type="data" label="Significant components in the ks distribution" />
    </inputs>
    <outputs>
        <data name="output" format="pdf"/>
    </outputs>
    <tests>
        <test>
            <param name="kaks" value="kaks.tabular" ftype="tabular" />
            <param name="components" value="components.tabular" ftype="tabular" />
            <output name="output" file="output.pdf" ftype="pdf" compare="contains" />
        </test>
    </tests>
    <help>
**What it does**
 
Draws a barplot of the significant components in the ks distribution.
    </help>
    <citations>
        <citation type="bibtex">
            @article{None,
            journal = {None},
            author = {1. Wafula EK},
            title = {Manuscript in preparation},
            year = {None},
            url = {https://github.com/dePamphilis/PlantTribes},}
        </citation>
    </citations>
</tool>