# HG changeset patch
# User greg
# Date 1488394469 18000
# Node ID dab0ce7e128a5859cbc4dabb4178e8ca9fcd646e
# Parent  cecea681ef4017eb24a42fa32e5b511d521213b5
Uploaded

diff -r cecea681ef40 -r dab0ce7e128a kaks_analysis.xml
--- a/kaks_analysis.xml	Wed Mar 01 13:48:38 2017 -0500
+++ b/kaks_analysis.xml	Wed Mar 01 13:54:29 2017 -0500
@@ -35,8 +35,8 @@
                 --proteins_species_2 '$comparison_cond.proteins_species_2'
             #end if
             #if str($options_type.options_type_selector) == 'advanced':
-                --min_coverage $min_coverage
-                --recalibration_rate $recalibration_rate
+                --min_coverage $options_type.min_coverage
+                --recalibration_rate $options_type.recalibration_rate
                 #if str($codeml_ctl_file_select) == 'yes':
                     --codeml_ctl_file '$codeml_ctl_file_cond.codeml_ctl_file'
                     # No else block needed here because the default codeml_ctl config