Mercurial > repos > greg > kaks_analysis
comparison kaks_analysis.xml @ 35:5c246135e07d draft
Uploaded
| author | greg |
|---|---|
| date | Mon, 22 May 2017 15:23:38 -0400 |
| parents | 8ff9aac5419f |
| children | ff040a476523 |
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| 34:8ff9aac5419f | 35:5c246135e07d |
|---|---|
| 164 <param name="non_commercial_use" label="I certify that I am not using this tool for commercial purposes." type="boolean" truevalue="NON_COMMERCIAL_USE" falsevalue="COMMERCIAL_USE" checked="False"> | 164 <param name="non_commercial_use" label="I certify that I am not using this tool for commercial purposes." type="boolean" truevalue="NON_COMMERCIAL_USE" falsevalue="COMMERCIAL_USE" checked="False"> |
| 165 <validator type="expression" message="This tool is only available for non-commercial use.">value == True</validator> | 165 <validator type="expression" message="This tool is only available for non-commercial use.">value == True</validator> |
| 166 </param> | 166 </param> |
| 167 </inputs> | 167 </inputs> |
| 168 <outputs> | 168 <outputs> |
| 169 <data name="output_species1_fna" format="fasta" label="KaKs analysis (coding sequences) on ${on_string}" /> | 169 <data name="output_species1_fna" format="fasta" label="${tool.name} (coding sequences) on ${on_string}" /> |
| 170 <data name="output_species1_faa" format="fasta" label="KaKs analysis (amino acids) on ${on_string}" /> | 170 <data name="output_species1_faa" format="fasta" label="${tool.name} (amino acids) on ${on_string}" /> |
| 171 <data name="output_species2_fna" format="fasta" label="KaKs analysis (coding sequences) on ${on_string}"> | 171 <data name="output_species2_fna" format="fasta" label="${tool.name} (coding sequences) on ${on_string}"> |
| 172 <filter>comparison_cond['comparison'] == 'orthologs'</filter> | 172 <filter>comparison_cond['comparison'] == 'orthologs'</filter> |
| 173 </data> | 173 </data> |
| 174 <data name="output_species2_faa" format="fasta" label="KaKs analysis (amino acids) on ${on_string}"> | 174 <data name="output_species2_faa" format="fasta" label="${tool.name} (amino acids) on ${on_string}"> |
| 175 <filter>comparison_cond['comparison'] == 'orthologs'</filter> | 175 <filter>comparison_cond['comparison'] == 'orthologs'</filter> |
| 176 </data> | 176 </data> |
| 177 <data name="output_species1_paralog" format="tabular" label="KaKs analysis (blastn results) on ${on_string}"> | 177 <data name="output_species1_paralog" format="tabular" label="${tool.name} (blastn results) on ${on_string}"> |
| 178 <filter>comparison_cond['comparison'] == 'paralogs'</filter> | 178 <filter>comparison_cond['comparison'] == 'paralogs'</filter> |
| 179 </data> | 179 </data> |
| 180 <data name="output_species1_ortholog" format="tabular" label="KaKs analysis (blastn results) on ${on_string}"> | 180 <data name="output_species1_ortholog" format="tabular" label="${tool.name} (blastn results) on ${on_string}"> |
| 181 <filter>comparison_cond['comparison'] == 'orthologs'</filter> | 181 <filter>comparison_cond['comparison'] == 'orthologs'</filter> |
| 182 </data> | 182 </data> |
| 183 <data name="output_species2_ortholog" format="tabular" label="KaKs analysis (blastn results) on ${on_string}"> | 183 <data name="output_species2_ortholog" format="tabular" label="${tool.name} (blastn results) on ${on_string}"> |
| 184 <filter>comparison_cond['comparison'] == 'orthologs'</filter> | 184 <filter>comparison_cond['comparison'] == 'orthologs'</filter> |
| 185 </data> | 185 </data> |
| 186 <data name="output_rbhb" format="tabular" label="KaKs analysis (paralogous pairs) on ${on_string}" /> | 186 <data name="output_rbhb" format="tabular" label="${tool.name} (paralogous pairs) on ${on_string}" /> |
| 187 <data name="output_kaks" format="tabular" label="KaKs analysis on ${on_string}" /> | 187 <data name="output_kaks" format="tabular" label="${tool.name} on ${on_string}" /> |
| 188 <data name="output_components" format="tabular" label="KaKs analysis (significant components in the ks distribution) on ${on_string}"> | 188 <data name="output_components" format="tabular" label="${tool.name} (significant components in the ks distribution) on ${on_string}"> |
| 189 <filter>options_type['options_type_selector'] == 'advanced' and options_type['fit_components_cond']['fit_components'] == 'yes'</filter> | 189 <filter>options_type['options_type_selector'] == 'advanced' and options_type['fit_components_cond']['fit_components'] == 'yes'</filter> |
| 190 </data> | 190 </data> |
| 191 </outputs> | 191 </outputs> |
| 192 <tests> | 192 <tests> |
| 193 <test> | 193 <test> |