# HG changeset patch
# User greg
# Date 1516805721 18000
# Node ID 6fe65d1379a8b30cc10c860935e26fb9e9c59c19
# Parent  2b4e1bd725f719aeb48b679abff455c1e34e6ece
Uploaded

diff -r 2b4e1bd725f7 -r 6fe65d1379a8 ideas_preprocessor.xml
--- a/ideas_preprocessor.xml	Wed Jan 24 08:30:05 2018 -0500
+++ b/ideas_preprocessor.xml	Wed Jan 24 09:55:21 2018 -0500
@@ -31,11 +31,9 @@
 Rscript '$__tool_directory__/ideas_preprocessor.R'
 --ideaspre_input_config '$ideaspre_input_config'
 #if str($specify_chrom_window) == "yes":
-    --ideas_input_config '$ideas_input_config'
+    --chrom_bed_input '$specify_chrom_window_cond.chrom_bed_input'
     --chromosome_windows '$chromosome_windows'
-#end if
-#if str($specify_chrom_window) == "yes":
-    --chrom_bed_input '$specify_chrom_window_cond.chrom_bed_input'
+    --ideas_input_config '$ideas_input_config'
 #else:
     --chrom_len_file '$chromInfo'
     --window_size $specify_chrom_window_cond.window_size