Mercurial > repos > greg > ideas_preprocessor
comparison ideas_preprocessor.xml @ 31:c9f28cfea770 draft
Uploaded
| author | greg |
|---|---|
| date | Tue, 06 Feb 2018 09:33:18 -0500 |
| parents | 55d264cd49e8 |
| children |
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| 30:0cb6ff8ba6df | 31:c9f28cfea770 |
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| 159 <extra_files type="file" name="chromosome_windows.txt" value="chromosome_windows.txt"/> | 159 <extra_files type="file" name="chromosome_windows.txt" value="chromosome_windows.txt"/> |
| 160 <extra_files type="file" name="IDEAS_input_config.txt" value="IDEAS_input_config.txt"/> | 160 <extra_files type="file" name="IDEAS_input_config.txt" value="IDEAS_input_config.txt"/> |
| 161 <extra_files type="file" name="tmp.tar.gz" value="tmp.tar.gz" compare="sim_size"/> | 161 <extra_files type="file" name="tmp.tar.gz" value="tmp.tar.gz" compare="sim_size"/> |
| 162 </output> | 162 </output> |
| 163 </test> | 163 </test> |
| 164 <!-- This test requires a Galaxy instance configured with an hg19 chromosome length file. | |
| 165 <test> | |
| 166 <param name="input" value="e001-h3k4me3.bigwig" ftype="bigwig" dbkey="hg19"/> | |
| 167 <param name="specify_chrom_windows" value="no"/> | |
| 168 <param name="window_size" value="50000000"/> | |
| 169 <output name="output" file="output2.html" ftype="ideaspre"> | |
| 170 <extra_files type="file" name="chromosomes.bed" value="chromosomes2.bed"/> | |
| 171 <extra_files type="file" name="IDEAS_input_config.txt" value="IDEAS_input_config2.txt"/> | |
| 172 <extra_files type="file" name="tmp.tar.gz" value="tmp2.tar.gz" compare="sim_size"/> | |
| 173 </output> | |
| 174 </test> | |
| 175 --> | |
| 164 </tests> | 176 </tests> |
| 165 <help> | 177 <help> |
| 166 **What it does** | 178 **What it does** |
| 167 | 179 |
| 168 Takes as input a list of epigenetic data sets (histones, chromatin accessibility, CpG methylation, TFs, etc.) | 180 Takes as input a list of epigenetic data sets (histones, chromatin accessibility, CpG methylation, TFs, etc.) |