Mercurial > repos > greg > ideas_preprocessor

comparison ideas_preprocessor.xml @ 20:237ee7319452 draft

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author greg
date Wed, 31 Jan 2018 08:22:34 -0500
parents 6ff92012abb7
children 3651f1592f3f
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19:c7e0b4358961 20:237ee7319452
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
11 #set chromosome_windows = "chromosome_windows.txt" 11 #set chromosome_windows = "chromosome_windows.txt"
12 #set ideaspre_input_config = "ideaspre_input_config.txt" 12 #set ideaspre_input_config = "ideaspre_input_config.txt"
13 #set specify_chrom_windows = $specify_chrom_windows_cond.specify_chrom_windows 13 #set specify_chrom_windows = $specify_chrom_windows_cond.specify_chrom_windows
14 #set tmp_dir = "tmp"
15 mkdir $tmp_dir &&
16 mkdir $output.files_path && 14 mkdir $output.files_path &&
17 #if str($specify_chrom_windows) == "yes": 15 #if str($specify_chrom_windows) == "yes":
18 ############################################## 16 ##############################################
19 ## Using a bed file for defining chrom windows, 17 ## Using a bed file for defining chrom windows,
20 ## so categorize the window positions by 18 ## so categorize the window positions by