# HG changeset patch # User greg # Date 1511288608 18000 # Node ID fc6f39767c833b6976cf2e6d113b1574b7a66192 # Parent bc1e9eb54f3ca6861d80045abe32caf638f63dc0 Uploaded diff -r bc1e9eb54f3c -r fc6f39767c83 ideas_genome_tracks.R --- a/ideas_genome_tracks.R Tue Nov 21 09:04:59 2017 -0500 +++ b/ideas_genome_tracks.R Tue Nov 21 13:23:28 2017 -0500 @@ -88,12 +88,12 @@ create_primary_html = function(output_trackhub, tracks_dir) { track_files <- list.files(path=tracks_dir); - s <- paste('\n\n\n\n\n \n', sep=""); cat(s, file=output_trackhub); } diff -r bc1e9eb54f3c -r fc6f39767c83 ideas_genome_tracks.xml --- a/ideas_genome_tracks.xml Tue Nov 21 09:04:59 2017 -0500 +++ b/ideas_genome_tracks.xml Tue Nov 21 13:23:28 2017 -0500 @@ -48,7 +48,7 @@ #end if -w '$output_trackhub' -x '$output_trackhub.files_path' -&>/dev/null +&>proc.log ]]> @@ -62,7 +62,7 @@ - + @@ -77,6 +77,20 @@ + + + + + + + + + + + + + + diff -r bc1e9eb54f3c -r fc6f39767c83 test-data/IDEAS_out.cluster --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/IDEAS_out.cluster Tue Nov 21 13:23:28 2017 -0500 @@ -0,0 +1,1 @@ +id0 0:0 diff -r bc1e9eb54f3c -r fc6f39767c83 test-data/IDEAS_out.para --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/IDEAS_out.para Tue Nov 21 13:23:28 2017 -0500 @@ -0,0 +1,2 @@ +#count h3k4me3 h3k4me3*h3k4me3 +60.000000 0.000000 10.000000 diff -r bc1e9eb54f3c -r fc6f39767c83 test-data/IDEAS_out.profile --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/IDEAS_out.profile Tue Nov 21 13:23:28 2017 -0500 @@ -0,0 +1,2 @@ +1 0.958910 +49 0.980769 diff -r bc1e9eb54f3c -r fc6f39767c83 test-data/IDEAS_out.state --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/IDEAS_out.state Tue Nov 21 13:23:28 2017 -0500 @@ -0,0 +1,51 @@ +#ID CHR POSst POSed e001 PosClass +R100001 chr1 21819600 21819800 0 0 +R100002 chr1 21819800 21820000 0 1 +R100003 chr1 21820000 21820200 0 1 +R100004 chr1 21820200 21820400 0 1 +R100005 chr1 21820400 21820600 0 1 +R100006 chr1 21820600 21820800 0 1 +R100007 chr1 21820800 21821000 0 1 +R100008 chr1 21821000 21821200 0 1 +R100009 chr1 21821200 21821400 0 1 +R100010 chr1 21821400 21821600 0 1 +R100011 chr1 21821600 21821800 0 1 +R100012 chr1 21821800 21822000 0 1 +R100013 chr1 21822000 21822200 0 1 +R100014 chr1 21822200 21822400 0 1 +R100015 chr1 21822400 21822600 0 1 +R100016 chr1 21822600 21822800 0 1 +R100017 chr1 21822800 21823000 0 1 +R100018 chr1 21823000 21823200 0 1 +R100019 chr1 21823200 21823400 0 1 +R100020 chr1 21823400 21823600 0 1 +R100021 chr1 21823600 21823800 0 1 +R100022 chr1 21823800 21824000 0 1 +R100023 chr1 21824000 21824200 0 1 +R100024 chr1 21824200 21824400 0 1 +R100025 chr1 21824400 21824600 0 1 +R100026 chr1 21824600 21824800 0 1 +R100027 chr1 21824800 21825000 0 1 +R100028 chr1 21825000 21825200 0 1 +R100029 chr1 21825200 21825400 0 1 +R100030 chr1 21825400 21825600 0 1 +R100031 chr1 21825600 21825800 0 1 +R100032 chr1 21825800 21826000 0 1 +R100033 chr1 21826000 21826200 0 1 +R100034 chr1 21826200 21826400 0 1 +R100035 chr1 21826400 21826600 0 1 +R100036 chr1 21826600 21826800 0 1 +R100037 chr1 21826800 21827000 0 1 +R100038 chr1 21827000 21827200 0 1 +R100039 chr1 21827200 21827400 0 1 +R100040 chr1 21827400 21827600 0 1 +R100041 chr1 21827600 21827800 0 1 +R100042 chr1 21827800 21828000 0 1 +R100043 chr1 21828000 21828200 0 1 +R100044 chr1 21828200 21828400 0 1 +R100045 chr1 21828400 21828600 0 1 +R100046 chr1 21829000 21829200 0 1 +R100047 chr1 21829400 21829600 0 1 +R100048 chr1 21829600 21829800 0 1 +R100049 chr1 21829800 21830000 0 1 +R100050 chr1 21830000 21830200 0 1 diff -r bc1e9eb54f3c -r fc6f39767c83 test-data/e001-h3k4me3.bigwig Binary file test-data/e001-h3k4me3.bigwig has changed diff -r bc1e9eb54f3c -r fc6f39767c83 test-data/output_trackhub.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output_trackhub.html Tue Nov 21 13:23:28 2017 -0500 @@ -0,0 +1,10 @@ + + + + + + + diff -r bc1e9eb54f3c -r fc6f39767c83 test-data/test.bed --- a/test-data/test.bed Tue Nov 21 09:04:59 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,50 +0,0 @@ -chr1 21819600 21819800 R100001 -chr1 21819800 21820000 R100002 -chr1 21820000 21820200 R100003 -chr1 21820200 21820400 R100004 -chr1 21820400 21820600 R100005 -chr1 21820600 21820800 R100006 -chr1 21820800 21821000 R100007 -chr1 21821000 21821200 R100008 -chr1 21821200 21821400 R100009 -chr1 21821400 21821600 R100010 -chr1 21821600 21821800 R100011 -chr1 21821800 21822000 R100012 -chr1 21822000 21822200 R100013 -chr1 21822200 21822400 R100014 -chr1 21822400 21822600 R100015 -chr1 21822600 21822800 R100016 -chr1 21822800 21823000 R100017 -chr1 21823000 21823200 R100018 -chr1 21823200 21823400 R100019 -chr1 21823400 21823600 R100020 -chr1 21823600 21823800 R100021 -chr1 21823800 21824000 R100022 -chr1 21824000 21824200 R100023 -chr1 21824200 21824400 R100024 -chr1 21824400 21824600 R100025 -chr1 21824600 21824800 R100026 -chr1 21824800 21825000 R100027 -chr1 21825000 21825200 R100028 -chr1 21825200 21825400 R100029 -chr1 21825400 21825600 R100030 -chr1 21825600 21825800 R100031 -chr1 21825800 21826000 R100032 -chr1 21826000 21826200 R100033 -chr1 21826200 21826400 R100034 -chr1 21826400 21826600 R100035 -chr1 21826600 21826800 R100036 -chr1 21826800 21827000 R100037 -chr1 21827000 21827200 R100038 -chr1 21827200 21827400 R100039 -chr1 21827400 21827600 R100040 -chr1 21827600 21827800 R100041 -chr1 21827800 21828000 R100042 -chr1 21828000 21828200 R100043 -chr1 21828200 21828400 R100044 -chr1 21828400 21828600 R100045 -chr1 21829000 21829200 R100046 -chr1 21829400 21829600 R100047 -chr1 21829600 21829800 R100048 -chr1 21829800 21830000 R100049 -chr1 21830000 21830200 R100050