# HG changeset patch # User greg # Date 1511800152 18000 # Node ID de98a1b0be8b2f8a59f62a274815952d4330319d # Parent 4c42188478a7761cae0ec694137faf9b52517339 Uploaded diff -r 4c42188478a7 -r de98a1b0be8b ideas_genome_tracks.R --- a/ideas_genome_tracks.R Mon Nov 27 11:15:22 2017 -0500 +++ b/ideas_genome_tracks.R Mon Nov 27 11:29:12 2017 -0500 @@ -203,12 +203,12 @@ write.table(contents, file=genomes_file_path, quote=F, row.names=F, col.names=F); # Create the tracks. -tracks_dir <- paste(hub_dir, "/", "tracks", "/", sep=""); +tracks_dir <- paste(hub_dir, opt$build, "/", sep=""); dir.create(tracks_dir, showWarnings=FALSE); track_db <- create_track_db(opt$input_dir_state, opt$chrom_len_file, tracks_dir, opt$hub_name, opt$short_label, opt$long_label, track_color); # Create the trackDb.txt output. -track_db_file_path <- paste(hub_dir, "trackDb.txt", sep=""); +track_db_file_path <- paste(tracks_dir, "trackDb.txt", sep=""); write.table(track_db, file=track_db_file_path, quote=F, row.names=F, col.names=F); # Create the primary HTML dataset.