# HG changeset patch # User greg # Date 1504017473 14400 # Node ID 917ad957431245dab47bc41e01a7d006057320bf # Parent 6f8af8e816d0fe96db301a91b668960783a3118c Uploaded diff -r 6f8af8e816d0 -r 917ad9574312 .shed.yml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/.shed.yml Tue Aug 29 10:37:53 2017 -0400 @@ -0,0 +1,17 @@ +name: ideas +owner: greg +description: | + Contains a tool that employs the IDEAS (Integrative and Discriminative Epigenome Annotation System) method for jointly and + quantitatively characterizing multivariate epigenetic landscapes in many cell types, tissues or conditions +homepage_url: http://sites.stat.psu.edu/~yzz2/IDEAS/ +long_description: | + Contains a tool that employs the IDEAS (Integrative and Discriminative Epigenome Annotation System) method for jointly and + quantitatively characterizing multivariate epigenetic landscapes in many cell types, tissues or conditions. The method + accounts for position dependent epigenetic events and detects local cell type relationships, which not only help to improve + the accuracy of annotating functional classes of DNA sequences, but also reveal cell type constitutive and specific loci. + The method utilizes Bayesian non-parametric techniques to automatically identify the best model size fitting to the data so + users do not have to specify the number of states. On the other hand, users can still specify the number of states if desired. +remote_repository_url: +type: unrestricted +categories: +- Epigenetics