# HG changeset patch
# User greg
# Date 1502459259 14400
# Node ID 64c372086d411266f935d41951038af6f5ae8d15
# Parent  f8e36f4b71c73d1a0eaa8761f284a52fa71d6df7
Uploaded

diff -r f8e36f4b71c7 -r 64c372086d41 ideas.xml
--- a/ideas.xml	Fri Aug 11 09:39:53 2017 -0400
+++ b/ideas.xml	Fri Aug 11 09:47:39 2017 -0400
@@ -27,8 +27,9 @@
     #set specify_genomic_window_cond = $input_type_cond.specify_genomic_window_cond
     #set specify_genomic_window = $specify_genomic_window_cond.specify_genomic_window
     #if str($specify_genomic_window) == 'yes':
-        --bed '$bed_input'
+        -bed '$bed_input'
     #else:
+        -bed $tmp_dir/*.bed
         -gsz '$chromInfo'
         -wsz $specify_genomic_window_cond.window_size
         #set restrict_chromosomes = $specify_genomic_window_cond.restrict_chromosomes_cond.restrict_chromosomes