Mercurial > repos > greg > ideas
comparison ideas.xml @ 55:fa1e5f44d79e draft
Uploaded
| author | greg |
|---|---|
| date | Wed, 23 Aug 2017 14:39:21 -0400 |
| parents | 7abcf1870e39 |
| children | 0b7b0929fb3c |
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| 54:7abcf1870e39 | 55:fa1e5f44d79e |
|---|---|
| 124 ${input_items.cell_type_name} ${input_items.epigenetic_factor_name} ${input_items.input} | 124 ${input_items.cell_type_name} ${input_items.epigenetic_factor_name} ${input_items.input} |
| 125 #end for | 125 #end for |
| 126 #end if]]></configfile> | 126 #end if]]></configfile> |
| 127 <configfile name="extract_prep_input_config"><![CDATA[ | 127 <configfile name="extract_prep_input_config"><![CDATA[ |
| 128 #if $input_type_cond.cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor == "extract": | 128 #if $input_type_cond.cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor == "extract": |
| 129 #!/bin/bash | |
| 130 #set $cell_type_epigenetic_factor_cond=$input_type_cond.cell_type_epigenetic_factor_cond | 129 #set $cell_type_epigenetic_factor_cond=$input_type_cond.cell_type_epigenetic_factor_cond |
| 131 #set $input_name_positions=$cell_type_epigenetic_factor_cond.input_name_positions | 130 #set $input_name_positions=$cell_type_epigenetic_factor_cond.input_name_positions |
| 132 #for $i in $cell_type_epigenetic_factor_cond.input: | 131 #for $i in $cell_type_epigenetic_factor_cond.input: |
| 133 #set $file_name_with_ext="${i##*/}" | 132 #set $file_name_with_ext="${i##*/}" |
| 134 #set $file_name="${file_name_with_ext%%.*}" | 133 #set $file_name="${file_name_with_ext%%.*}" |